Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

B3GNTL1 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1)

Identity

Alias_symbol (synonym)B3GNT8
Other alias
HGNC (Hugo) B3GNTL1
LocusID (NCBI) 146712
Atlas_Id 60685
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 80901667 and ends at 81009686 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
B3GNTL1 (17q25.3) / B3GNTL1 (17q25.3)B3GNTL1 (17q25.3) / CLCN4 (Xp22.2)B3GNTL1 (17q25.3) / LRRC3C (17q12)
WDR45B (17q25.3) / B3GNTL1 (17q25.3)ZNF750 (17q25.3) / B3GNTL1 (17q25.3)ZNF750 B3GNTL1
WDR45L B3GNTL1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B3GNTL1   21727
Cards
Entrez_Gene (NCBI)B3GNTL1  146712  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1
AliasesB3GNT8
GeneCards (Weizmann)B3GNTL1
Ensembl hg19 (Hinxton)ENSG00000175711 [Gene_View]  chr17:80901667-81009686 [Contig_View]  B3GNTL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175711 [Gene_View]  chr17:80901667-81009686 [Contig_View]  B3GNTL1 [Vega]
ICGC DataPortalENSG00000175711
TCGA cBioPortalB3GNTL1
AceView (NCBI)B3GNTL1
Genatlas (Paris)B3GNTL1
WikiGenes146712
SOURCE (Princeton)B3GNTL1
Genetics Home Reference (NIH)B3GNTL1
Genomic and cartography
GoldenPath hg19 (UCSC)B3GNTL1  -     chr17:80901667-81009686 -  17q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)B3GNTL1  -     17q25.3   [Description]    (hg38-Dec_2013)
EnsemblB3GNTL1 - 17q25.3 [CytoView hg19]  B3GNTL1 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIB3GNTL1 [Mapview hg19]  B3GNTL1 [Mapview hg38]
OMIM615337   
Gene and transcription
Genbank (Entrez)AK054757 AK126018 AY304503 AY634364 BC019623
RefSeq transcript (Entrez)NM_001009905
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010663 NT_187612 NW_004929408
Consensus coding sequences : CCDS (NCBI)B3GNTL1
Cluster EST : UnigeneHs.607824 [ NCBI ]
CGAP (NCI)Hs.607824
Alternative Splicing GalleryENSG00000175711
Gene ExpressionB3GNTL1 [ NCBI-GEO ]   B3GNTL1 [ EBI - ARRAY_EXPRESS ]   B3GNTL1 [ SEEK ]   B3GNTL1 [ MEM ]
Gene Expression Viewer (FireBrowse)B3GNTL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146712
GTEX Portal (Tissue expression)B3GNTL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ67FW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ67FW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ67FW5
Splice isoforms : SwissVarQ67FW5
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusQ67FW5
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)   
Domain families : Pfam (NCBI)pfam00535   
Conserved Domain (NCBI)B3GNTL1
DMDM Disease mutations146712
Blocks (Seattle)B3GNTL1
SuperfamilyQ67FW5
Human Protein AtlasENSG00000175711
Peptide AtlasQ67FW5
HPRD14071
IPIIPI00174847   
Protein Interaction databases
DIP (DOE-UCLA)Q67FW5
IntAct (EBI)Q67FW5
FunCoupENSG00000175711
BioGRIDB3GNTL1
STRING (EMBL)B3GNTL1
ZODIACB3GNTL1
Ontologies - Pathways
QuickGOQ67FW5
Ontology : AmiGOmetabolic process  transferase activity, transferring glycosyl groups  
Ontology : EGO-EBImetabolic process  transferase activity, transferring glycosyl groups  
NDEx NetworkB3GNTL1
Atlas of Cancer Signalling NetworkB3GNTL1
Wikipedia pathwaysB3GNTL1
Orthology - Evolution
OrthoDB146712
GeneTree (enSembl)ENSG00000175711
Phylogenetic Trees/Animal Genes : TreeFamB3GNTL1
HOVERGENQ67FW5
HOGENOMQ67FW5
Homologs : HomoloGeneB3GNTL1
Homology/Alignments : Family Browser (UCSC)B3GNTL1
Gene fusions - Rearrangements
Fusion: TCGAZNF750 B3GNTL1
Fusion: TCGAWDR45L B3GNTL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB3GNTL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B3GNTL1
dbVarB3GNTL1
ClinVarB3GNTL1
1000_GenomesB3GNTL1 
Exome Variant ServerB3GNTL1
ExAC (Exome Aggregation Consortium)B3GNTL1 (select the gene name)
Genetic variants : HAPMAP146712
Genomic Variants (DGV)B3GNTL1 [DGVbeta]
DECIPHER (Syndromes)17:80901667-81009686  ENSG00000175711
CONAN: Copy Number AnalysisB3GNTL1 
Mutations
ICGC Data PortalB3GNTL1 
TCGA Data PortalB3GNTL1 
Broad Tumor PortalB3GNTL1
OASIS PortalB3GNTL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB3GNTL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB3GNTL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B3GNTL1
DgiDB (Drug Gene Interaction Database)B3GNTL1
DoCM (Curated mutations)B3GNTL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B3GNTL1 (select a term)
intoGenB3GNTL1
Cancer3DB3GNTL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615337   
Orphanet
MedgenB3GNTL1
Genetic Testing Registry B3GNTL1
NextProtQ67FW5 [Medical]
TSGene146712
GENETestsB3GNTL1
Huge Navigator B3GNTL1 [HugePedia]
snp3D : Map Gene to Disease146712
BioCentury BCIQB3GNTL1
ClinGenB3GNTL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146712
Chemical/Pharm GKB GenePA134910219
Clinical trialB3GNTL1
Miscellaneous
canSAR (ICR)B3GNTL1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB3GNTL1
EVEXB3GNTL1
GoPubMedB3GNTL1
iHOPB3GNTL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:55:35 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.