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B4GALNT4 (beta-1,4-N-acetyl-galactosaminyltransferase 4)

Identity

Alias_symbol (synonym)FLJ25045
NGalNAc-T1
Other alias-
HGNC (Hugo) B4GALNT4
LocusID (NCBI) 338707
Atlas_Id 56522
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 369795 and ends at 382117 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B4GALNT4   26315
Cards
Entrez_Gene (NCBI)B4GALNT4  338707  beta-1,4-N-acetyl-galactosaminyltransferase 4
Aliases
GeneCards (Weizmann)B4GALNT4
Ensembl hg19 (Hinxton)ENSG00000182272 [Gene_View]  chr11:369795-382117 [Contig_View]  B4GALNT4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182272 [Gene_View]  chr11:369795-382117 [Contig_View]  B4GALNT4 [Vega]
ICGC DataPortalENSG00000182272
TCGA cBioPortalB4GALNT4
AceView (NCBI)B4GALNT4
Genatlas (Paris)B4GALNT4
WikiGenes338707
SOURCE (Princeton)B4GALNT4
Genetics Home Reference (NIH)B4GALNT4
Genomic and cartography
GoldenPath hg19 (UCSC)B4GALNT4  -     chr11:369795-382117 +  11p15.5   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)B4GALNT4  -     11p15.5   [Description]    (hg38-Dec_2013)
EnsemblB4GALNT4 - 11p15.5 [CytoView hg19]  B4GALNT4 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIB4GALNT4 [Mapview hg19]  B4GALNT4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_178537
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)B4GALNT4
Cluster EST : UnigeneHs.148074 [ NCBI ]
CGAP (NCI)Hs.148074
Alternative Splicing GalleryENSG00000182272
Gene ExpressionB4GALNT4 [ NCBI-GEO ]   B4GALNT4 [ EBI - ARRAY_EXPRESS ]   B4GALNT4 [ SEEK ]   B4GALNT4 [ MEM ]
Gene Expression Viewer (FireBrowse)B4GALNT4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338707
GTEX Portal (Tissue expression)B4GALNT4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ76KP1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ76KP1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ76KP1
Splice isoforms : SwissVarQ76KP1
Catalytic activity : Enzyme2.4.1.244 [ Enzyme-Expasy ]   2.4.1.2442.4.1.244 [ IntEnz-EBI ]   2.4.1.244 [ BRENDA ]   2.4.1.244 [ KEGG ]   
PhosPhoSitePlusQ76KP1
Domains : Interpro (EBI)Chond_GalNAc    Nucleotide-diphossugar_trans    PA14_dom   
Domain families : Pfam (Sanger)CHGN (PF05679)    PA14 (PF07691)   
Domain families : Pfam (NCBI)pfam05679    pfam07691   
Domain families : Smart (EMBL)PA14 (SM00758)  
Conserved Domain (NCBI)B4GALNT4
DMDM Disease mutations338707
Blocks (Seattle)B4GALNT4
SuperfamilyQ76KP1
Human Protein AtlasENSG00000182272
Peptide AtlasQ76KP1
HPRD08046
IPIIPI00065312   IPI00979127   IPI00982505   
Protein Interaction databases
DIP (DOE-UCLA)Q76KP1
IntAct (EBI)Q76KP1
FunCoupENSG00000182272
BioGRIDB4GALNT4
STRING (EMBL)B4GALNT4
ZODIACB4GALNT4
Ontologies - Pathways
QuickGOQ76KP1
Ontology : AmiGOacetylgalactosaminyltransferase activity  integral component of membrane  Golgi cisterna membrane  N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity  
Ontology : EGO-EBIacetylgalactosaminyltransferase activity  integral component of membrane  Golgi cisterna membrane  N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity  
NDEx NetworkB4GALNT4
Atlas of Cancer Signalling NetworkB4GALNT4
Wikipedia pathwaysB4GALNT4
Orthology - Evolution
OrthoDB338707
GeneTree (enSembl)ENSG00000182272
Phylogenetic Trees/Animal Genes : TreeFamB4GALNT4
HOVERGENQ76KP1
HOGENOMQ76KP1
Homologs : HomoloGeneB4GALNT4
Homology/Alignments : Family Browser (UCSC)B4GALNT4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB4GALNT4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B4GALNT4
dbVarB4GALNT4
ClinVarB4GALNT4
1000_GenomesB4GALNT4 
Exome Variant ServerB4GALNT4
ExAC (Exome Aggregation Consortium)B4GALNT4 (select the gene name)
Genetic variants : HAPMAP338707
Genomic Variants (DGV)B4GALNT4 [DGVbeta]
DECIPHER (Syndromes)11:369795-382117  ENSG00000182272
CONAN: Copy Number AnalysisB4GALNT4 
Mutations
ICGC Data PortalB4GALNT4 
TCGA Data PortalB4GALNT4 
Broad Tumor PortalB4GALNT4
OASIS PortalB4GALNT4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB4GALNT4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB4GALNT4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B4GALNT4
DgiDB (Drug Gene Interaction Database)B4GALNT4
DoCM (Curated mutations)B4GALNT4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B4GALNT4 (select a term)
intoGenB4GALNT4
Cancer3DB4GALNT4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenB4GALNT4
Genetic Testing Registry B4GALNT4
NextProtQ76KP1 [Medical]
TSGene338707
GENETestsB4GALNT4
Huge Navigator B4GALNT4 [HugePedia]
snp3D : Map Gene to Disease338707
BioCentury BCIQB4GALNT4
ClinGenB4GALNT4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338707
Chemical/Pharm GKB GenePA142672565
Clinical trialB4GALNT4
Miscellaneous
canSAR (ICR)B4GALNT4 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB4GALNT4
EVEXB4GALNT4
GoPubMedB4GALNT4
iHOPB4GALNT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:53:39 CEST 2017

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