Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

B4GALT2 (beta-1,4-galactosyltransferase 2)

Identity

Alias_namesUDP-Gal:betaGlcNAc beta 1
Alias_symbol (synonym)beta4Gal-T2
Other aliasB4Gal-T2
B4Gal-T3
HGNC (Hugo) B4GALT2
LocusID (NCBI) 8704
Atlas_Id 47673
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 43980505 and ends at 43991171 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
B4GALT2 (1p34.1) / B4GALT2 (1p34.1)MACF1 (1p34.3) / B4GALT2 (1p34.1)PTPRF (1p34.2) / B4GALT2 (1p34.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B4GALT2   925
Cards
Entrez_Gene (NCBI)B4GALT2  8704  beta-1,4-galactosyltransferase 2
AliasesB4Gal-T2; B4Gal-T3; beta4Gal-T2
GeneCards (Weizmann)B4GALT2
Ensembl hg19 (Hinxton)ENSG00000117411 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117411 [Gene_View]  chr1:43980505-43991171 [Contig_View]  B4GALT2 [Vega]
ICGC DataPortalENSG00000117411
TCGA cBioPortalB4GALT2
AceView (NCBI)B4GALT2
Genatlas (Paris)B4GALT2
WikiGenes8704
SOURCE (Princeton)B4GALT2
Genetics Home Reference (NIH)B4GALT2
Genomic and cartography
GoldenPath hg38 (UCSC)B4GALT2  -     chr1:43980505-43991171 +  1p34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B4GALT2  -     1p34.1   [Description]    (hg19-Feb_2009)
EnsemblB4GALT2 - 1p34.1 [CytoView hg19]  B4GALT2 - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBIB4GALT2 [Mapview hg19]  B4GALT2 [Mapview hg38]
OMIM604013   
Gene and transcription
Genbank (Entrez)AB024434 AF038660 AI702508 AK074533 AK095873
RefSeq transcript (Entrez)NM_001005417 NM_003780 NM_030587
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)B4GALT2
Cluster EST : UnigeneHs.736507 [ NCBI ]
CGAP (NCI)Hs.736507
Alternative Splicing GalleryENSG00000117411
Gene ExpressionB4GALT2 [ NCBI-GEO ]   B4GALT2 [ EBI - ARRAY_EXPRESS ]   B4GALT2 [ SEEK ]   B4GALT2 [ MEM ]
Gene Expression Viewer (FireBrowse)B4GALT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8704
GTEX Portal (Tissue expression)B4GALT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60909   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60909  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60909
Splice isoforms : SwissVarO60909
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusO60909
Domains : Interpro (EBI)Galactosyl_T    Galactosyl_T_C    Galactosyl_T_N    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_7C (PF02709)    Glyco_transf_7N (PF13733)   
Domain families : Pfam (NCBI)pfam02709    pfam13733   
Conserved Domain (NCBI)B4GALT2
DMDM Disease mutations8704
Blocks (Seattle)B4GALT2
SuperfamilyO60909
Human Protein AtlasENSG00000117411
Peptide AtlasO60909
HPRD04928
IPIIPI00941315   IPI00386793   IPI00033031   
Protein Interaction databases
DIP (DOE-UCLA)O60909
IntAct (EBI)O60909
FunCoupENSG00000117411
BioGRIDB4GALT2
STRING (EMBL)B4GALT2
ZODIACB4GALT2
Ontologies - Pathways
QuickGOO60909
Ontology : AmiGOGolgi membrane  beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity  N-acetyllactosamine synthase activity  lactose synthase activity  nucleoplasm  Golgi apparatus  carbohydrate metabolic process  protein glycosylation  memory  locomotory behavior  galactosyltransferase activity  visual learning  integral component of membrane  keratan sulfate biosynthetic process  cerebellar Purkinje cell layer development  Golgi cisterna membrane  intracellular membrane-bounded organelle  metal ion binding  
Ontology : EGO-EBIGolgi membrane  beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity  N-acetyllactosamine synthase activity  lactose synthase activity  nucleoplasm  Golgi apparatus  carbohydrate metabolic process  protein glycosylation  memory  locomotory behavior  galactosyltransferase activity  visual learning  integral component of membrane  keratan sulfate biosynthetic process  cerebellar Purkinje cell layer development  Golgi cisterna membrane  intracellular membrane-bounded organelle  metal ion binding  
Pathways : KEGGGalactose metabolism    N-Glycan biosynthesis    Other types of O-glycan biosynthesis    Glycosaminoglycan biosynthesis - keratan sulfate    Glycosphingolipid biosynthesis - lacto and neolacto series   
NDEx NetworkB4GALT2
Atlas of Cancer Signalling NetworkB4GALT2
Wikipedia pathwaysB4GALT2
Orthology - Evolution
OrthoDB8704
GeneTree (enSembl)ENSG00000117411
Phylogenetic Trees/Animal Genes : TreeFamB4GALT2
HOVERGENO60909
HOGENOMO60909
Homologs : HomoloGeneB4GALT2
Homology/Alignments : Family Browser (UCSC)B4GALT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB4GALT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B4GALT2
dbVarB4GALT2
ClinVarB4GALT2
1000_GenomesB4GALT2 
Exome Variant ServerB4GALT2
ExAC (Exome Aggregation Consortium)B4GALT2 (select the gene name)
Genetic variants : HAPMAP8704
Genomic Variants (DGV)B4GALT2 [DGVbeta]
DECIPHERB4GALT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB4GALT2 
Mutations
ICGC Data PortalB4GALT2 
TCGA Data PortalB4GALT2 
Broad Tumor PortalB4GALT2
OASIS PortalB4GALT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB4GALT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB4GALT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B4GALT2
DgiDB (Drug Gene Interaction Database)B4GALT2
DoCM (Curated mutations)B4GALT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B4GALT2 (select a term)
intoGenB4GALT2
Cancer3DB4GALT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604013   
Orphanet
MedgenB4GALT2
Genetic Testing Registry B4GALT2
NextProtO60909 [Medical]
TSGene8704
GENETestsB4GALT2
Target ValidationB4GALT2
Huge Navigator B4GALT2 [HugePedia]
snp3D : Map Gene to Disease8704
BioCentury BCIQB4GALT2
ClinGenB4GALT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8704
Chemical/Pharm GKB GenePA25224
Clinical trialB4GALT2
Miscellaneous
canSAR (ICR)B4GALT2 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB4GALT2
EVEXB4GALT2
GoPubMedB4GALT2
iHOPB4GALT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:25:10 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.