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B4GALT4 (UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4)

Identity

Alias_namesUDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4
Alias_symbol (synonym)beta4Gal-T4
Other aliasB4Gal-T4
HGNC (Hugo) B4GALT4
LocusID (NCBI) 8702
Atlas_Id 60688
Location 3q13.32  [Link to chromosome band 3q13]
Location_base_pair Starts at 118930589 and ends at 118959752 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
B4GALT4 (3q13.32) / ACSL5 (10q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B4GALT4   927
Cards
Entrez_Gene (NCBI)B4GALT4  8702  UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4
AliasesB4Gal-T4; beta4Gal-T4
GeneCards (Weizmann)B4GALT4
Ensembl hg19 (Hinxton)ENSG00000121578 [Gene_View]  chr3:118930589-118959752 [Contig_View]  B4GALT4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000121578 [Gene_View]  chr3:118930589-118959752 [Contig_View]  B4GALT4 [Vega]
ICGC DataPortalENSG00000121578
TCGA cBioPortalB4GALT4
AceView (NCBI)B4GALT4
Genatlas (Paris)B4GALT4
WikiGenes8702
SOURCE (Princeton)B4GALT4
Genetics Home Reference (NIH)B4GALT4
Genomic and cartography
GoldenPath hg19 (UCSC)B4GALT4  -     chr3:118930589-118959752 -  3q13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)B4GALT4  -     3q13.32   [Description]    (hg38-Dec_2013)
EnsemblB4GALT4 - 3q13.32 [CytoView hg19]  B4GALT4 - 3q13.32 [CytoView hg38]
Mapping of homologs : NCBIB4GALT4 [Mapview hg19]  B4GALT4 [Mapview hg38]
OMIM604015   
Gene and transcription
Genbank (Entrez)AB024436 AF020920 AF022367 AF038662 AK001006
RefSeq transcript (Entrez)NM_003778 NM_212543
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)B4GALT4
Cluster EST : UnigeneHs.13225 [ NCBI ]
CGAP (NCI)Hs.13225
Alternative Splicing GalleryENSG00000121578
Gene ExpressionB4GALT4 [ NCBI-GEO ]   B4GALT4 [ EBI - ARRAY_EXPRESS ]   B4GALT4 [ SEEK ]   B4GALT4 [ MEM ]
Gene Expression Viewer (FireBrowse)B4GALT4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8702
GTEX Portal (Tissue expression)B4GALT4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60513   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60513  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60513
Splice isoforms : SwissVarO60513
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusO60513
Domains : Interpro (EBI)Galactosyl_T    Galactosyl_T_C    Galactosyl_T_N    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_7C (PF02709)    Glyco_transf_7N (PF13733)   
Domain families : Pfam (NCBI)pfam02709    pfam13733   
Conserved Domain (NCBI)B4GALT4
DMDM Disease mutations8702
Blocks (Seattle)B4GALT4
SuperfamilyO60513
Human Protein AtlasENSG00000121578
Peptide AtlasO60513
HPRD04930
IPIIPI00030128   IPI00945621   IPI00946167   IPI00946932   IPI00945052   IPI00791514   IPI00947120   IPI00945389   IPI00945221   IPI00945807   IPI00946289   
Protein Interaction databases
DIP (DOE-UCLA)O60513
IntAct (EBI)O60513
FunCoupENSG00000121578
BioGRIDB4GALT4
STRING (EMBL)B4GALT4
ZODIACB4GALT4
Ontologies - Pathways
QuickGOO60513
Ontology : AmiGOGolgi membrane  N-acetyllactosamine synthase activity  carbohydrate metabolic process  membrane lipid metabolic process  galactosyltransferase activity  integral component of membrane  keratan sulfate biosynthetic process  protein N-linked glycosylation via asparagine  glycosaminoglycan metabolic process  Golgi cisterna membrane  keratan sulfate metabolic process  post-translational protein modification  cellular protein metabolic process  small molecule metabolic process  metal ion binding  
Ontology : EGO-EBIGolgi membrane  N-acetyllactosamine synthase activity  carbohydrate metabolic process  membrane lipid metabolic process  galactosyltransferase activity  integral component of membrane  keratan sulfate biosynthetic process  protein N-linked glycosylation via asparagine  glycosaminoglycan metabolic process  Golgi cisterna membrane  keratan sulfate metabolic process  post-translational protein modification  cellular protein metabolic process  small molecule metabolic process  metal ion binding  
Pathways : KEGGGlycosaminoglycan biosynthesis - keratan sulfate    Glycosphingolipid biosynthesis - lacto and neolacto series   
NDEx NetworkB4GALT4
Atlas of Cancer Signalling NetworkB4GALT4
Wikipedia pathwaysB4GALT4
Orthology - Evolution
OrthoDB8702
GeneTree (enSembl)ENSG00000121578
Phylogenetic Trees/Animal Genes : TreeFamB4GALT4
HOVERGENO60513
HOGENOMO60513
Homologs : HomoloGeneB4GALT4
Homology/Alignments : Family Browser (UCSC)B4GALT4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB4GALT4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B4GALT4
dbVarB4GALT4
ClinVarB4GALT4
1000_GenomesB4GALT4 
Exome Variant ServerB4GALT4
ExAC (Exome Aggregation Consortium)B4GALT4 (select the gene name)
Genetic variants : HAPMAP8702
Genomic Variants (DGV)B4GALT4 [DGVbeta]
DECIPHER (Syndromes)3:118930589-118959752  ENSG00000121578
CONAN: Copy Number AnalysisB4GALT4 
Mutations
ICGC Data PortalB4GALT4 
TCGA Data PortalB4GALT4 
Broad Tumor PortalB4GALT4
OASIS PortalB4GALT4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB4GALT4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB4GALT4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B4GALT4
DgiDB (Drug Gene Interaction Database)B4GALT4
DoCM (Curated mutations)B4GALT4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B4GALT4 (select a term)
intoGenB4GALT4
Cancer3DB4GALT4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604015   
Orphanet
MedgenB4GALT4
Genetic Testing Registry B4GALT4
NextProtO60513 [Medical]
TSGene8702
GENETestsB4GALT4
Huge Navigator B4GALT4 [HugePedia]
snp3D : Map Gene to Disease8702
BioCentury BCIQB4GALT4
ClinGenB4GALT4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8702
Chemical/Pharm GKB GenePA25226
Clinical trialB4GALT4
Miscellaneous
canSAR (ICR)B4GALT4 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB4GALT4
EVEXB4GALT4
GoPubMedB4GALT4
iHOPB4GALT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 11:55:36 CET 2017

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