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B4GALT6 (beta-1,4-galactosyltransferase 6)

Identity

Alias_namesUDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6
Alias_symbol (synonym)beta4GalT-VI
Other aliasB4Gal-T6
beta4Gal-T6
HGNC (Hugo) B4GALT6
LocusID (NCBI) 9331
Atlas_Id 60690
Location 18q12.1  [Link to chromosome band 18q12]
Location_base_pair Starts at 31621036 and ends at 31684723 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ROCK1 (18q11.1) / B4GALT6 (18q12.1)SETD4 (21q22.12) / B4GALT6 (18q12.1)ROCK1 B4GALT6
SETD4 B4GALT6

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B4GALT6   929
Cards
Entrez_Gene (NCBI)B4GALT6  9331  beta-1,4-galactosyltransferase 6
AliasesB4Gal-T6; beta4Gal-T6
GeneCards (Weizmann)B4GALT6
Ensembl hg19 (Hinxton)ENSG00000118276 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118276 [Gene_View]  chr18:31621036-31684723 [Contig_View]  B4GALT6 [Vega]
ICGC DataPortalENSG00000118276
TCGA cBioPortalB4GALT6
AceView (NCBI)B4GALT6
Genatlas (Paris)B4GALT6
WikiGenes9331
SOURCE (Princeton)B4GALT6
Genetics Home Reference (NIH)B4GALT6
Genomic and cartography
GoldenPath hg38 (UCSC)B4GALT6  -     chr18:31621036-31684723 -  18q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B4GALT6  -     18q12.1   [Description]    (hg19-Feb_2009)
EnsemblB4GALT6 - 18q12.1 [CytoView hg19]  B4GALT6 - 18q12.1 [CytoView hg38]
Mapping of homologs : NCBIB4GALT6 [Mapview hg19]  B4GALT6 [Mapview hg38]
OMIM604017   
Gene and transcription
Genbank (Entrez)AB024742 AB209194 AF038664 AF069054 AF097159
RefSeq transcript (Entrez)NM_001330570 NM_004775
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)B4GALT6
Cluster EST : UnigeneHs.591063 [ NCBI ]
CGAP (NCI)Hs.591063
Alternative Splicing GalleryENSG00000118276
Gene ExpressionB4GALT6 [ NCBI-GEO ]   B4GALT6 [ EBI - ARRAY_EXPRESS ]   B4GALT6 [ SEEK ]   B4GALT6 [ MEM ]
Gene Expression Viewer (FireBrowse)B4GALT6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9331
GTEX Portal (Tissue expression)B4GALT6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBX8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBX8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBX8
Splice isoforms : SwissVarQ9UBX8
PhosPhoSitePlusQ9UBX8
Domains : Interpro (EBI)Galactosyl_T    Galactosyl_T_C    Galactosyl_T_N    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_7C (PF02709)    Glyco_transf_7N (PF13733)   
Domain families : Pfam (NCBI)pfam02709    pfam13733   
Conserved Domain (NCBI)B4GALT6
DMDM Disease mutations9331
Blocks (Seattle)B4GALT6
SuperfamilyQ9UBX8
Human Protein AtlasENSG00000118276
Peptide AtlasQ9UBX8
HPRD06808
IPIIPI00294617   IPI00555551   IPI00431762   IPI00292516   IPI00985426   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBX8
IntAct (EBI)Q9UBX8
FunCoupENSG00000118276
BioGRIDB4GALT6
STRING (EMBL)B4GALT6
ZODIACB4GALT6
Ontologies - Pathways
QuickGOQ9UBX8
Ontology : AmiGOGolgi membrane  beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity  carbohydrate metabolic process  protein glycosylation  galactosyltransferase activity  integral component of membrane  keratan sulfate biosynthetic process  Golgi cisterna membrane  metal ion binding  
Ontology : EGO-EBIGolgi membrane  beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity  carbohydrate metabolic process  protein glycosylation  galactosyltransferase activity  integral component of membrane  keratan sulfate biosynthetic process  Golgi cisterna membrane  metal ion binding  
Pathways : KEGGSphingolipid metabolism   
NDEx NetworkB4GALT6
Atlas of Cancer Signalling NetworkB4GALT6
Wikipedia pathwaysB4GALT6
Orthology - Evolution
OrthoDB9331
GeneTree (enSembl)ENSG00000118276
Phylogenetic Trees/Animal Genes : TreeFamB4GALT6
HOVERGENQ9UBX8
HOGENOMQ9UBX8
Homologs : HomoloGeneB4GALT6
Homology/Alignments : Family Browser (UCSC)B4GALT6
Gene fusions - Rearrangements
Fusion: TCGAROCK1 B4GALT6
Fusion: TCGASETD4 B4GALT6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB4GALT6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B4GALT6
dbVarB4GALT6
ClinVarB4GALT6
1000_GenomesB4GALT6 
Exome Variant ServerB4GALT6
ExAC (Exome Aggregation Consortium)B4GALT6 (select the gene name)
Genetic variants : HAPMAP9331
Genomic Variants (DGV)B4GALT6 [DGVbeta]
DECIPHERB4GALT6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB4GALT6 
Mutations
ICGC Data PortalB4GALT6 
TCGA Data PortalB4GALT6 
Broad Tumor PortalB4GALT6
OASIS PortalB4GALT6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB4GALT6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB4GALT6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B4GALT6
DgiDB (Drug Gene Interaction Database)B4GALT6
DoCM (Curated mutations)B4GALT6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B4GALT6 (select a term)
intoGenB4GALT6
Cancer3DB4GALT6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604017   
Orphanet
MedgenB4GALT6
Genetic Testing Registry B4GALT6
NextProtQ9UBX8 [Medical]
TSGene9331
GENETestsB4GALT6
Target ValidationB4GALT6
Huge Navigator B4GALT6 [HugePedia]
snp3D : Map Gene to Disease9331
BioCentury BCIQB4GALT6
ClinGenB4GALT6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9331
Chemical/Pharm GKB GenePA25228
Clinical trialB4GALT6
Miscellaneous
canSAR (ICR)B4GALT6 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB4GALT6
EVEXB4GALT6
GoPubMedB4GALT6
iHOPB4GALT6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:25 CEST 2017

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