Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

B4GALT7 (beta-1,4-galactosyltransferase 7)

Identity

Alias_namesxylosylprotein beta 1
Alias_symbol (synonym)XGALT-1
beta4Gal-T7
Other aliasEDSP1
XGALT1
XGPT1
HGNC (Hugo) B4GALT7
LocusID (NCBI) 11285
Atlas_Id 50103
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 177027119 and ends at 177037346 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
B4GALT7 (5q35.3) / NSD1 (5q35.2)B4GALT7 5q35.3 / NSD1 5q35.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B4GALT7   930
Cards
Entrez_Gene (NCBI)B4GALT7  11285  beta-1,4-galactosyltransferase 7
AliasesEDSP1; XGALT1; XGPT1
GeneCards (Weizmann)B4GALT7
Ensembl hg19 (Hinxton)ENSG00000027847 [Gene_View]  chr5:177027119-177037346 [Contig_View]  B4GALT7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000027847 [Gene_View]  chr5:177027119-177037346 [Contig_View]  B4GALT7 [Vega]
ICGC DataPortalENSG00000027847
TCGA cBioPortalB4GALT7
AceView (NCBI)B4GALT7
Genatlas (Paris)B4GALT7
WikiGenes11285
SOURCE (Princeton)B4GALT7
Genetics Home Reference (NIH)B4GALT7
Genomic and cartography
GoldenPath hg19 (UCSC)B4GALT7  -     chr5:177027119-177037346 +  5q35.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)B4GALT7  -     5q35.3   [Description]    (hg38-Dec_2013)
EnsemblB4GALT7 - 5q35.3 [CytoView hg19]  B4GALT7 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIB4GALT7 [Mapview hg19]  B4GALT7 [Mapview hg38]
OMIM130070   604327   
Gene and transcription
Genbank (Entrez)AB028600 AF142675 AJ005382 AK022566 AK023506
RefSeq transcript (Entrez)NM_007255
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_015977 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)B4GALT7
Cluster EST : UnigeneHs.455109 [ NCBI ]
CGAP (NCI)Hs.455109
Alternative Splicing GalleryENSG00000027847
Gene ExpressionB4GALT7 [ NCBI-GEO ]   B4GALT7 [ EBI - ARRAY_EXPRESS ]   B4GALT7 [ SEEK ]   B4GALT7 [ MEM ]
Gene Expression Viewer (FireBrowse)B4GALT7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11285
GTEX Portal (Tissue expression)B4GALT7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBV7
Splice isoforms : SwissVarQ9UBV7
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusQ9UBV7
Domains : Interpro (EBI)Galactosyl_T    Galactosyl_T_C    Galactosyl_T_N    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_7C (PF02709)    Glyco_transf_7N (PF13733)   
Domain families : Pfam (NCBI)pfam02709    pfam13733   
Conserved Domain (NCBI)B4GALT7
DMDM Disease mutations11285
Blocks (Seattle)B4GALT7
PDB (SRS)4IRP    4IRQ   
PDB (PDBSum)4IRP    4IRQ   
PDB (IMB)4IRP    4IRQ   
PDB (RSDB)4IRP    4IRQ   
Structural Biology KnowledgeBase4IRP    4IRQ   
SCOP (Structural Classification of Proteins)4IRP    4IRQ   
CATH (Classification of proteins structures)4IRP    4IRQ   
SuperfamilyQ9UBV7
Human Protein AtlasENSG00000027847
Peptide AtlasQ9UBV7
HPRD05060
IPIIPI00002792   IPI00965448   IPI00981452   IPI00965236   IPI00965732   IPI00965834   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBV7
IntAct (EBI)Q9UBV7
FunCoupENSG00000027847
BioGRIDB4GALT7
STRING (EMBL)B4GALT7
ZODIACB4GALT7
Ontologies - Pathways
QuickGOQ9UBV7
Ontology : AmiGOGolgi membrane  beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity  protein binding  Golgi apparatus  glycosaminoglycan biosynthetic process  proteoglycan metabolic process  cellular protein modification process  protein N-linked glycosylation  galactosyltransferase activity  galactosyltransferase activity  integral component of membrane  manganese ion binding  glycosaminoglycan metabolic process  extracellular matrix  Golgi cisterna membrane  extracellular fibril organization  xylosylprotein 4-beta-galactosyltransferase activity  xylosylprotein 4-beta-galactosyltransferase activity  negative regulation of fibroblast proliferation  
Ontology : EGO-EBIGolgi membrane  beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity  protein binding  Golgi apparatus  glycosaminoglycan biosynthetic process  proteoglycan metabolic process  cellular protein modification process  protein N-linked glycosylation  galactosyltransferase activity  galactosyltransferase activity  integral component of membrane  manganese ion binding  glycosaminoglycan metabolic process  extracellular matrix  Golgi cisterna membrane  extracellular fibril organization  xylosylprotein 4-beta-galactosyltransferase activity  xylosylprotein 4-beta-galactosyltransferase activity  negative regulation of fibroblast proliferation  
Pathways : KEGGGlycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate    Glycosaminoglycan biosynthesis - heparan sulfate / heparin   
NDEx NetworkB4GALT7
Atlas of Cancer Signalling NetworkB4GALT7
Wikipedia pathwaysB4GALT7
Orthology - Evolution
OrthoDB11285
GeneTree (enSembl)ENSG00000027847
Phylogenetic Trees/Animal Genes : TreeFamB4GALT7
HOVERGENQ9UBV7
HOGENOMQ9UBV7
Homologs : HomoloGeneB4GALT7
Homology/Alignments : Family Browser (UCSC)B4GALT7
Gene fusions - Rearrangements
Fusion : MitelmanB4GALT7/NSD1 [5q35.3/5q35.2]  
Fusion: TCGAB4GALT7 5q35.3 NSD1 5q35.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB4GALT7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B4GALT7
dbVarB4GALT7
ClinVarB4GALT7
1000_GenomesB4GALT7 
Exome Variant ServerB4GALT7
ExAC (Exome Aggregation Consortium)B4GALT7 (select the gene name)
Genetic variants : HAPMAP11285
Genomic Variants (DGV)B4GALT7 [DGVbeta]
DECIPHER (Syndromes)5:177027119-177037346  ENSG00000027847
CONAN: Copy Number AnalysisB4GALT7 
Mutations
ICGC Data PortalB4GALT7 
TCGA Data PortalB4GALT7 
Broad Tumor PortalB4GALT7
OASIS PortalB4GALT7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB4GALT7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB4GALT7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Ehlers Danlos Syndrome Variant Database
BioMutasearch B4GALT7
DgiDB (Drug Gene Interaction Database)B4GALT7
DoCM (Curated mutations)B4GALT7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B4GALT7 (select a term)
intoGenB4GALT7
Cancer3DB4GALT7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM130070    604327   
Orphanet20904    11083   
MedgenB4GALT7
Genetic Testing Registry B4GALT7
NextProtQ9UBV7 [Medical]
TSGene11285
GENETestsB4GALT7
Huge Navigator B4GALT7 [HugePedia]
snp3D : Map Gene to Disease11285
BioCentury BCIQB4GALT7
ClinGenB4GALT7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11285
Chemical/Pharm GKB GenePA25229
Clinical trialB4GALT7
Miscellaneous
canSAR (ICR)B4GALT7 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB4GALT7
EVEXB4GALT7
GoPubMedB4GALT7
iHOPB4GALT7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:57:14 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.