Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

B4GAT1 (beta-1,4-glucuronyltransferase 1)

Identity

Alias_names3-N-acetylglucosaminyltransferase
B3GNT6
B3GNT1
Alias_symbol (synonym)iGNT
iGAT
iGnT
BETA3GNTI
B3GN-T1
Other aliasMDDGA13
HGNC (Hugo) B4GAT1
LocusID (NCBI) 11041
Atlas_Id 51124
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 66345372 and ends at 66347690 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)B4GAT1   15685
Cards
Entrez_Gene (NCBI)B4GAT1  11041  beta-1,4-glucuronyltransferase 1
AliasesB3GN-T1; B3GNT1; B3GNT6; BETA3GNTI; 
MDDGA13; iGAT; iGNT
GeneCards (Weizmann)B4GAT1
Ensembl hg19 (Hinxton)ENSG00000174684 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174684 [Gene_View]  ENSG00000174684 [Sequence]  chr11:66345372-66347690 [Contig_View]  B4GAT1 [Vega]
ICGC DataPortalENSG00000174684
TCGA cBioPortalB4GAT1
AceView (NCBI)B4GAT1
Genatlas (Paris)B4GAT1
WikiGenes11041
SOURCE (Princeton)B4GAT1
Genetics Home Reference (NIH)B4GAT1
Genomic and cartography
GoldenPath hg38 (UCSC)B4GAT1  -     chr11:66345372-66347690 -  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B4GAT1  -     11q13.2   [Description]    (hg19-Feb_2009)
EnsemblB4GAT1 - 11q13.2 [CytoView hg19]  B4GAT1 - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBIB4GAT1 [Mapview hg19]  B4GAT1 [Mapview hg38]
OMIM605517   615287   
Gene and transcription
Genbank (Entrez)AF029893 AK075354 AK098389 AK098779 AK225182
RefSeq transcript (Entrez)NM_006876
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)B4GAT1
Cluster EST : UnigeneHs.8526 [ NCBI ]
CGAP (NCI)Hs.8526
Alternative Splicing GalleryENSG00000174684
Gene ExpressionB4GAT1 [ NCBI-GEO ]   B4GAT1 [ EBI - ARRAY_EXPRESS ]   B4GAT1 [ SEEK ]   B4GAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)B4GAT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11041
GTEX Portal (Tissue expression)B4GAT1
Human Protein AtlasENSG00000174684-B4GAT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43505   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43505  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43505
Splice isoforms : SwissVarO43505
PhosPhoSitePlusO43505
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)B4GAT1
DMDM Disease mutations11041
Blocks (Seattle)B4GAT1
SuperfamilyO43505
Human Protein Atlas [tissue]ENSG00000174684-B4GAT1 [tissue]
Peptide AtlasO43505
HPRD09270
IPIIPI00009997   IPI01010029   
Protein Interaction databases
DIP (DOE-UCLA)O43505
IntAct (EBI)O43505
FunCoupENSG00000174684
BioGRIDB4GAT1
STRING (EMBL)B4GAT1
ZODIACB4GAT1
Ontologies - Pathways
QuickGOO43505
Ontology : AmiGOGolgi membrane  protein binding  Golgi apparatus  protein O-linked glycosylation  axon guidance  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  glucuronosyltransferase activity  keratan sulfate biosynthetic process  integral component of Golgi membrane  poly-N-acetyllactosamine biosynthetic process  protein O-linked mannosylation  metal ion binding  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  protein binding  Golgi apparatus  protein O-linked glycosylation  axon guidance  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity  glucuronosyltransferase activity  keratan sulfate biosynthetic process  integral component of Golgi membrane  poly-N-acetyllactosamine biosynthetic process  protein O-linked mannosylation  metal ion binding  extracellular exosome  
NDEx NetworkB4GAT1
Atlas of Cancer Signalling NetworkB4GAT1
Wikipedia pathwaysB4GAT1
Orthology - Evolution
OrthoDB11041
GeneTree (enSembl)ENSG00000174684
Phylogenetic Trees/Animal Genes : TreeFamB4GAT1
HOGENOMO43505
Homologs : HomoloGeneB4GAT1
Homology/Alignments : Family Browser (UCSC)B4GAT1
Gene fusions - Rearrangements
Fusion : QuiverB4GAT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB4GAT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B4GAT1
dbVarB4GAT1
ClinVarB4GAT1
1000_GenomesB4GAT1 
Exome Variant ServerB4GAT1
ExAC (Exome Aggregation Consortium)ENSG00000174684
GNOMAD BrowserENSG00000174684
Varsome BrowserB4GAT1
Genetic variants : HAPMAP11041
Genomic Variants (DGV)B4GAT1 [DGVbeta]
DECIPHERB4GAT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB4GAT1 
Mutations
ICGC Data PortalB4GAT1 
TCGA Data PortalB4GAT1 
Broad Tumor PortalB4GAT1
OASIS PortalB4GAT1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDB4GAT1
BioMutasearch B4GAT1
DgiDB (Drug Gene Interaction Database)B4GAT1
DoCM (Curated mutations)B4GAT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B4GAT1 (select a term)
intoGenB4GAT1
Cancer3DB4GAT1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605517    615287   
Orphanet8725   
DisGeNETB4GAT1
MedgenB4GAT1
Genetic Testing Registry B4GAT1
NextProtO43505 [Medical]
TSGene11041
GENETestsB4GAT1
Target ValidationB4GAT1
Huge Navigator B4GAT1 [HugePedia]
snp3D : Map Gene to Disease11041
BioCentury BCIQB4GAT1
ClinGenB4GAT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11041
Chemical/Pharm GKB GenePA164741279
Clinical trialB4GAT1
Miscellaneous
canSAR (ICR)B4GAT1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB4GAT1
EVEXB4GAT1
GoPubMedB4GAT1
iHOPB4GAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Dec 21 15:07:12 CET 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.