Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

B9D2 (B9 protein domain 2)

Identity

Alias_symbol (synonym)MGC4093
MKS10
Other aliasICIS-1
MKSR2
HGNC (Hugo) B9D2
LocusID (NCBI) 80776
Atlas_Id 60692
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 41354417 and ends at 41364173 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)B9D2   28636
Cards
Entrez_Gene (NCBI)B9D2  80776  B9 protein domain 2
AliasesICIS-1; MKS10; MKSR2
GeneCards (Weizmann)B9D2
Ensembl hg19 (Hinxton)ENSG00000123810 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123810 [Gene_View]  chr19:41354417-41364173 [Contig_View]  B9D2 [Vega]
ICGC DataPortalENSG00000123810
TCGA cBioPortalB9D2
AceView (NCBI)B9D2
Genatlas (Paris)B9D2
WikiGenes80776
SOURCE (Princeton)B9D2
Genetics Home Reference (NIH)B9D2
Genomic and cartography
GoldenPath hg38 (UCSC)B9D2  -     chr19:41354417-41364173 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)B9D2  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblB9D2 - 19q13.2 [CytoView hg19]  B9D2 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIB9D2 [Mapview hg19]  B9D2 [Mapview hg38]
OMIM611951   614175   
Gene and transcription
Genbank (Entrez)BC004157 BC004444 BM833644 BU609059 DA196504
RefSeq transcript (Entrez)NM_030578
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)B9D2
Cluster EST : UnigeneHs.567596 [ NCBI ]
CGAP (NCI)Hs.567596
Alternative Splicing GalleryENSG00000123810
Gene ExpressionB9D2 [ NCBI-GEO ]   B9D2 [ EBI - ARRAY_EXPRESS ]   B9D2 [ SEEK ]   B9D2 [ MEM ]
Gene Expression Viewer (FireBrowse)B9D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80776
GTEX Portal (Tissue expression)B9D2
Human Protein AtlasENSG00000123810-B9D2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BPU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BPU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BPU9
Splice isoforms : SwissVarQ9BPU9
PhosPhoSitePlusQ9BPU9
Domaine pattern : Prosite (Expaxy)B9 (PS51381)   
Domains : Interpro (EBI)B9_dom   
Domain families : Pfam (Sanger)B9-C2 (PF07162)   
Domain families : Pfam (NCBI)pfam07162   
Conserved Domain (NCBI)B9D2
DMDM Disease mutations80776
Blocks (Seattle)B9D2
SuperfamilyQ9BPU9
Human Protein Atlas [tissue]ENSG00000123810-B9D2 [tissue]
Peptide AtlasQ9BPU9
HPRD14613
IPIIPI00012253   
Protein Interaction databases
DIP (DOE-UCLA)Q9BPU9
IntAct (EBI)Q9BPU9
FunCoupENSG00000123810
BioGRIDB9D2
STRING (EMBL)B9D2
ZODIACB9D2
Ontologies - Pathways
QuickGOQ9BPU9
Ontology : AmiGOprotein binding  nucleus  centrosome  cytosol  sister chromatid cohesion  membrane  MKS complex  ciliary basal body  gamma-tubulin binding  cilium assembly  ciliary basal body docking  
Ontology : EGO-EBIprotein binding  nucleus  centrosome  cytosol  sister chromatid cohesion  membrane  MKS complex  ciliary basal body  gamma-tubulin binding  cilium assembly  ciliary basal body docking  
NDEx NetworkB9D2
Atlas of Cancer Signalling NetworkB9D2
Wikipedia pathwaysB9D2
Orthology - Evolution
OrthoDB80776
GeneTree (enSembl)ENSG00000123810
Phylogenetic Trees/Animal Genes : TreeFamB9D2
HOVERGENQ9BPU9
HOGENOMQ9BPU9
Homologs : HomoloGeneB9D2
Homology/Alignments : Family Browser (UCSC)B9D2
Gene fusions - Rearrangements
Fusion: Tumor Portal B9D2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerB9D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)B9D2
dbVarB9D2
ClinVarB9D2
1000_GenomesB9D2 
Exome Variant ServerB9D2
ExAC (Exome Aggregation Consortium)ENSG00000123810
GNOMAD BrowserENSG00000123810
Genetic variants : HAPMAP80776
Genomic Variants (DGV)B9D2 [DGVbeta]
DECIPHERB9D2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisB9D2 
Mutations
ICGC Data PortalB9D2 
TCGA Data PortalB9D2 
Broad Tumor PortalB9D2
OASIS PortalB9D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICB9D2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDB9D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch B9D2
DgiDB (Drug Gene Interaction Database)B9D2
DoCM (Curated mutations)B9D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)B9D2 (select a term)
intoGenB9D2
Cancer3DB9D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611951    614175   
Orphanet280   
MedgenB9D2
Genetic Testing Registry B9D2
NextProtQ9BPU9 [Medical]
TSGene80776
GENETestsB9D2
Target ValidationB9D2
Huge Navigator B9D2 [HugePedia]
snp3D : Map Gene to Disease80776
BioCentury BCIQB9D2
ClinGenB9D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80776
Chemical/Pharm GKB GenePA162377347
Clinical trialB9D2
Miscellaneous
canSAR (ICR)B9D2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineB9D2
EVEXB9D2
GoPubMedB9D2
iHOPB9D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:38:51 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.