Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BAALC-AS2 (BAALC antisense RNA 2)

Identity

Alias_namesC8orf56
BAALCOS
chromosome 8 open reading frame 56
BAALC opposite strand
Alias_symbol (synonym)MGC39526
Other alias
HGNC (Hugo) BAALC-AS2
LocusID (NCBI) 157556
Atlas_Id 60694
Location 8q22.3  [Link to chromosome band 8q22]
Location_base_pair Starts at 103132963 and ends at 103141342 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BAALC-AS2   28595
Cards
Entrez_Gene (NCBI)BAALC-AS2  157556  BAALC antisense RNA 2
AliasesBAALCOS; C8orf56
GeneCards (Weizmann)BAALC-AS2
Ensembl hg19 (Hinxton)ENSG00000236939 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236939 [Gene_View]  chr8:103132963-103141342 [Contig_View]  BAALC-AS2 [Vega]
ICGC DataPortalENSG00000236939
TCGA cBioPortalBAALC-AS2
AceView (NCBI)BAALC-AS2
Genatlas (Paris)BAALC-AS2
WikiGenes157556
SOURCE (Princeton)BAALC-AS2
Genetics Home Reference (NIH)BAALC-AS2
Genomic and cartography
GoldenPath hg38 (UCSC)BAALC-AS2  -     chr8:103132963-103141342 -  8q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BAALC-AS2  -     8q22.3   [Description]    (hg19-Feb_2009)
EnsemblBAALC-AS2 - 8q22.3 [CytoView hg19]  BAALC-AS2 - 8q22.3 [CytoView hg38]
Mapping of homologs : NCBIBAALC-AS2 [Mapview hg19]  BAALC-AS2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC029562 BC071743
RefSeq transcript (Entrez)NM_198099
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BAALC-AS2
Cluster EST : UnigeneHs.459124 [ NCBI ]
CGAP (NCI)Hs.459124
Alternative Splicing GalleryENSG00000236939
Gene ExpressionBAALC-AS2 [ NCBI-GEO ]   BAALC-AS2 [ EBI - ARRAY_EXPRESS ]   BAALC-AS2 [ SEEK ]   BAALC-AS2 [ MEM ]
Gene Expression Viewer (FireBrowse)BAALC-AS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157556
GTEX Portal (Tissue expression)BAALC-AS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C853   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C853  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C853
Splice isoforms : SwissVarP0C853
PhosPhoSitePlusP0C853
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BAALC-AS2
DMDM Disease mutations157556
Blocks (Seattle)BAALC-AS2
SuperfamilyP0C853
Human Protein AtlasENSG00000236939
Peptide AtlasP0C853
IPIIPI00166517   
Protein Interaction databases
DIP (DOE-UCLA)P0C853
IntAct (EBI)P0C853
FunCoupENSG00000236939
BioGRIDBAALC-AS2
STRING (EMBL)BAALC-AS2
ZODIACBAALC-AS2
Ontologies - Pathways
QuickGOP0C853
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkBAALC-AS2
Atlas of Cancer Signalling NetworkBAALC-AS2
Wikipedia pathwaysBAALC-AS2
Orthology - Evolution
OrthoDB157556
GeneTree (enSembl)ENSG00000236939
Phylogenetic Trees/Animal Genes : TreeFamBAALC-AS2
HOVERGENP0C853
HOGENOMP0C853
Homologs : HomoloGeneBAALC-AS2
Homology/Alignments : Family Browser (UCSC)BAALC-AS2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBAALC-AS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BAALC-AS2
dbVarBAALC-AS2
ClinVarBAALC-AS2
1000_GenomesBAALC-AS2 
Exome Variant ServerBAALC-AS2
ExAC (Exome Aggregation Consortium)BAALC-AS2 (select the gene name)
Genetic variants : HAPMAP157556
Genomic Variants (DGV)BAALC-AS2 [DGVbeta]
DECIPHERBAALC-AS2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBAALC-AS2 
Mutations
ICGC Data PortalBAALC-AS2 
TCGA Data PortalBAALC-AS2 
Broad Tumor PortalBAALC-AS2
OASIS PortalBAALC-AS2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBAALC-AS2
BioMutasearch BAALC-AS2
DgiDB (Drug Gene Interaction Database)BAALC-AS2
DoCM (Curated mutations)BAALC-AS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BAALC-AS2 (select a term)
intoGenBAALC-AS2
Cancer3DBAALC-AS2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBAALC-AS2
Genetic Testing Registry BAALC-AS2
NextProtP0C853 [Medical]
TSGene157556
GENETestsBAALC-AS2
Target ValidationBAALC-AS2
Huge Navigator BAALC-AS2 [HugePedia]
snp3D : Map Gene to Disease157556
BioCentury BCIQBAALC-AS2
ClinGenBAALC-AS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD157556
Chemical/Pharm GKB GenePA142672319
Clinical trialBAALC-AS2
Miscellaneous
canSAR (ICR)BAALC-AS2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBAALC-AS2
EVEXBAALC-AS2
GoPubMedBAALC-AS2
iHOPBAALC-AS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:26 CEST 2017

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