Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BACH1-IT3 (BACH1 intronic transcript 3)

Identity

Alias (NCBI)C21orf8
NCRNA00097
HGNC (Hugo) BACH1-IT3
HGNC Previous nameC21orf8
HGNC Previous namechromosome 21 open reading frame 8
 BACH1 intronic transcript 3 (non-protein coding)
LocusID (NCBI) 54147
Atlas_Id 79834
Location 21q21.3  [Link to chromosome band 21q21]
Location_base_pair Starts at 29496047 and ends at 29500382 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BACH1-IT3   16455
Cards
Entrez_Gene (NCBI)BACH1-IT3  54147  BACH1 intronic transcript 3
AliasesC21orf8; NCRNA00097
GeneCards (Weizmann)BACH1-IT3
Ensembl hg19 (Hinxton)ENSG00000234293 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234293 [Gene_View]  ENSG00000234293 [Sequence]  chr21:29496047-29500382 [Contig_View]  BACH1-IT3 [Vega]
ICGC DataPortalENSG00000234293
TCGA cBioPortalBACH1-IT3
AceView (NCBI)BACH1-IT3
Genatlas (Paris)BACH1-IT3
WikiGenes54147
SOURCE (Princeton)BACH1-IT3
Genetics Home Reference (NIH)BACH1-IT3
Genomic and cartography
GoldenPath hg38 (UCSC)BACH1-IT3  -     chr21:29496047-29500382 +  21q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BACH1-IT3  -     21q21.3   [Description]    (hg19-Feb_2009)
GoldenPathBACH1-IT3 - 21q21.3 [CytoView hg19]  BACH1-IT3 - 21q21.3 [CytoView hg38]
ImmunoBaseENSG00000234293
genome Data Viewer NCBIBACH1-IT3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BX100223
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BACH1-IT3
Alternative Splicing GalleryENSG00000234293
Gene ExpressionBACH1-IT3 [ NCBI-GEO ]   BACH1-IT3 [ EBI - ARRAY_EXPRESS ]   BACH1-IT3 [ SEEK ]   BACH1-IT3 [ MEM ]
Gene Expression Viewer (FireBrowse)BACH1-IT3 [ Firebrowse - Broad ]
GenevisibleExpression of BACH1-IT3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54147
GTEX Portal (Tissue expression)BACH1-IT3
Human Protein AtlasENSG00000234293-BACH1-IT3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BACH1-IT3
DMDM Disease mutations54147
Blocks (Seattle)BACH1-IT3
Human Protein Atlas [tissue]ENSG00000234293-BACH1-IT3 [tissue]
Protein Interaction databases
FunCoupENSG00000234293
BioGRIDBACH1-IT3
STRING (EMBL)BACH1-IT3
ZODIACBACH1-IT3
Ontologies - Pathways
Huge Navigator BACH1-IT3 [HugePedia]
snp3D : Map Gene to Disease54147
BioCentury BCIQBACH1-IT3
ClinGenBACH1-IT3
Clinical trials, drugs, therapy
Protein Interactions : CTD54147
Pharm GKB GenePA25866
Clinical trialBACH1-IT3
Miscellaneous
canSAR (ICR)BACH1-IT3 (select the gene name)
HarmonizomeBACH1-IT3
DataMed IndexBACH1-IT3
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineBACH1-IT3
EVEXBACH1-IT3
GoPubMedBACH1-IT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:06:25 CEST 2020

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