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BAGE (B melanoma antigen)

Identity

Alias_namesmember 1
Alias_symbol (synonym)CT2.1
BAGE1
Other alias
HGNC (Hugo) BAGE
LocusID (NCBI) 574
Atlas_Id 744
Location 21p11.2  [Link to chromosome band 21p11]
Location_base_pair Starts at 10413520 and ends at 10454661 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BAGE   942
Cards
Entrez_Gene (NCBI)BAGE  574  B melanoma antigen
AliasesBAGE1; CT2.1
GeneCards (Weizmann)BAGE
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:10413520-10454661 [Contig_View]  BAGE [Vega]
TCGA cBioPortalBAGE
AceView (NCBI)BAGE
Genatlas (Paris)BAGE
WikiGenes574
SOURCE (Princeton)BAGE
Genetics Home Reference (NIH)BAGE
Genomic and cartography
GoldenPath hg38 (UCSC)BAGE  -     chr21:10413520-10454661 +  21p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BAGE  -     21p11.2   [Description]    (hg19-Feb_2009)
EnsemblBAGE - 21p11.2 [CytoView hg19]  BAGE - 21p11.2 [CytoView hg38]
Mapping of homologs : NCBIBAGE [Mapview hg19]  BAGE [Mapview hg38]
OMIM605167   
Gene and transcription
Genbank (Entrez)AF527551 AF527552 AF527553 AF527554 BC107038
RefSeq transcript (Entrez)NM_001187
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BAGE
Cluster EST : UnigeneHs.624543 [ NCBI ]
CGAP (NCI)Hs.624543
Gene ExpressionBAGE [ NCBI-GEO ]   BAGE [ EBI - ARRAY_EXPRESS ]   BAGE [ SEEK ]   BAGE [ MEM ]
Gene Expression Viewer (FireBrowse)BAGE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)574
GTEX Portal (Tissue expression)BAGE
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13072   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13072  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13072
Splice isoforms : SwissVarQ13072
PhosPhoSitePlusQ13072
Domains : Interpro (EBI)BAGE   
Domain families : Pfam (Sanger)BAGE (PF08180)   
Domain families : Pfam (NCBI)pfam08180   
Conserved Domain (NCBI)BAGE
DMDM Disease mutations574
Blocks (Seattle)BAGE
SuperfamilyQ13072
Peptide AtlasQ13072
HPRD05523
IPIIPI00427292   IPI00816665   
Protein Interaction databases
DIP (DOE-UCLA)Q13072
IntAct (EBI)Q13072
BioGRIDBAGE
STRING (EMBL)BAGE
ZODIACBAGE
Ontologies - Pathways
QuickGOQ13072
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkBAGE
Atlas of Cancer Signalling NetworkBAGE
Wikipedia pathwaysBAGE
Orthology - Evolution
OrthoDB574
Phylogenetic Trees/Animal Genes : TreeFamBAGE
HOVERGENQ13072
HOGENOMQ13072
Homologs : HomoloGeneBAGE
Homology/Alignments : Family Browser (UCSC)BAGE
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBAGE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BAGE
dbVarBAGE
ClinVarBAGE
1000_GenomesBAGE 
Exome Variant ServerBAGE
ExAC (Exome Aggregation Consortium)BAGE (select the gene name)
Genetic variants : HAPMAP574
Genomic Variants (DGV)BAGE [DGVbeta]
DECIPHERBAGE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBAGE 
Mutations
ICGC Data PortalBAGE 
TCGA Data PortalBAGE 
Broad Tumor PortalBAGE
OASIS PortalBAGE [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBAGE
BioMutasearch BAGE
DgiDB (Drug Gene Interaction Database)BAGE
DoCM (Curated mutations)BAGE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BAGE (select a term)
intoGenBAGE
Cancer3DBAGE(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605167   
Orphanet
MedgenBAGE
Genetic Testing Registry BAGE
NextProtQ13072 [Medical]
TSGene574
GENETestsBAGE
Target ValidationBAGE
Huge Navigator BAGE [HugePedia]
snp3D : Map Gene to Disease574
BioCentury BCIQBAGE
ClinGenBAGE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD574
Chemical/Pharm GKB GenePA25242
Clinical trialBAGE
Miscellaneous
canSAR (ICR)BAGE (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBAGE
EVEXBAGE
GoPubMedBAGE
iHOPBAGE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:25:13 CEST 2017

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