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BAGE2 (BAGE family member 2)

Identity

Alias_namesmember 2
Alias_symbol (synonym)CT2.2
Other alias
HGNC (Hugo) BAGE2
LocusID (NCBI) 85319
Atlas_Id 745
Location 21p11.2  [Link to chromosome band 21p11]
Location_base_pair Starts at 10413532 and ends at 10491615 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BAGE2   15723
Cards
Entrez_Gene (NCBI)BAGE2  85319  BAGE family member 2
AliasesCT2.2
GeneCards (Weizmann)BAGE2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr21:10413532-10491615 [Contig_View]  BAGE2 [Vega]
TCGA cBioPortalBAGE2
AceView (NCBI)BAGE2
Genatlas (Paris)BAGE2
WikiGenes85319
SOURCE (Princeton)BAGE2
Genetics Home Reference (NIH)BAGE2
Genomic and cartography
GoldenPath hg38 (UCSC)BAGE2  -     chr21:10413532-10491615 +  21p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BAGE2  -     21p11.2   [Description]    (hg19-Feb_2009)
EnsemblBAGE2 - 21p11.2 [CytoView hg19]  BAGE2 - 21p11.2 [CytoView hg38]
Mapping of homologs : NCBIBAGE2 [Mapview hg19]  BAGE2 [Mapview hg38]
OMIM617776   
Gene and transcription
Genbank (Entrez)AF218570 AF527550 AK292540 BC101132 BC101133
RefSeq transcript (Entrez)NM_182482
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BAGE2
Cluster EST : UnigeneHs.545789 [ NCBI ]
CGAP (NCI)Hs.545789
Gene ExpressionBAGE2 [ NCBI-GEO ]   BAGE2 [ EBI - ARRAY_EXPRESS ]   BAGE2 [ SEEK ]   BAGE2 [ MEM ]
Gene Expression Viewer (FireBrowse)BAGE2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85319
GTEX Portal (Tissue expression)BAGE2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86Y30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86Y30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86Y30
Splice isoforms : SwissVarQ86Y30
PhosPhoSitePlusQ86Y30
Domains : Interpro (EBI)BAGE   
Domain families : Pfam (Sanger)BAGE (PF08180)   
Domain families : Pfam (NCBI)pfam08180   
Conserved Domain (NCBI)BAGE2
DMDM Disease mutations85319
Blocks (Seattle)BAGE2
SuperfamilyQ86Y30
Peptide AtlasQ86Y30
HPRD16535
IPIIPI00334200   
Protein Interaction databases
DIP (DOE-UCLA)Q86Y30
IntAct (EBI)Q86Y30
BioGRIDBAGE2
STRING (EMBL)BAGE2
ZODIACBAGE2
Ontologies - Pathways
QuickGOQ86Y30
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkBAGE2
Atlas of Cancer Signalling NetworkBAGE2
Wikipedia pathwaysBAGE2
Orthology - Evolution
OrthoDB85319
Phylogenetic Trees/Animal Genes : TreeFamBAGE2
HOVERGENQ86Y30
HOGENOMQ86Y30
Homologs : HomoloGeneBAGE2
Homology/Alignments : Family Browser (UCSC)BAGE2
Gene fusions - Rearrangements
Fusion : QuiverBAGE2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBAGE2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BAGE2
dbVarBAGE2
ClinVarBAGE2
1000_GenomesBAGE2 
Exome Variant ServerBAGE2
Genetic variants : HAPMAP85319
Genomic Variants (DGV)BAGE2 [DGVbeta]
DECIPHERBAGE2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBAGE2 
Mutations
ICGC Data PortalBAGE2 
TCGA Data PortalBAGE2 
Broad Tumor PortalBAGE2
OASIS PortalBAGE2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBAGE2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BAGE2
DgiDB (Drug Gene Interaction Database)BAGE2
DoCM (Curated mutations)BAGE2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BAGE2 (select a term)
intoGenBAGE2
Cancer3DBAGE2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617776   
Orphanet
DisGeNETBAGE2
MedgenBAGE2
Genetic Testing Registry BAGE2
NextProtQ86Y30 [Medical]
TSGene85319
GENETestsBAGE2
Target ValidationBAGE2
Huge Navigator BAGE2 [HugePedia]
snp3D : Map Gene to Disease85319
BioCentury BCIQBAGE2
ClinGenBAGE2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85319
Chemical/Pharm GKB GenePA25243
Clinical trialBAGE2
Miscellaneous
canSAR (ICR)BAGE2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBAGE2
EVEXBAGE2
GoPubMedBAGE2
iHOPBAGE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:15:51 CEST 2018

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