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BAGE3 (BAGE family member 3)

Identity

Alias_namesmember 3
Alias_symbol (synonym)CT2.3
Other alias
HGNC (Hugo) BAGE3
LocusID (NCBI) 85318
Atlas_Id 746
Location 21p11.2  [Link to chromosome band 21p11]
Location_base_pair Starts at 10413532 and ends at 10491615 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BAGE3   15728
Cards
Entrez_Gene (NCBI)BAGE3  85318  BAGE family member 3
AliasesCT2.3
GeneCards (Weizmann)BAGE3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr21:10413532-10491615 [Contig_View]  BAGE3 [Vega]
TCGA cBioPortalBAGE3
AceView (NCBI)BAGE3
Genatlas (Paris)BAGE3
WikiGenes85318
SOURCE (Princeton)BAGE3
Genetics Home Reference (NIH)BAGE3
Genomic and cartography
GoldenPath hg38 (UCSC)BAGE3  -     chr21:10413532-10491615 +  21p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BAGE3  -     21p11.2   [Description]    (hg19-Feb_2009)
EnsemblBAGE3 - 21p11.2 [CytoView hg19]  BAGE3 - 21p11.2 [CytoView hg38]
Mapping of homologs : NCBIBAGE3 [Mapview hg19]  BAGE3 [Mapview hg38]
OMIM617777   
Gene and transcription
Genbank (Entrez)AF339514 BC101134
RefSeq transcript (Entrez)NM_182481
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BAGE3
Cluster EST : UnigeneHs.545789 [ NCBI ]
CGAP (NCI)Hs.545789
Gene ExpressionBAGE3 [ NCBI-GEO ]   BAGE3 [ EBI - ARRAY_EXPRESS ]   BAGE3 [ SEEK ]   BAGE3 [ MEM ]
Gene Expression Viewer (FireBrowse)BAGE3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85318
GTEX Portal (Tissue expression)BAGE3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86Y29   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86Y29  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86Y29
Splice isoforms : SwissVarQ86Y29
PhosPhoSitePlusQ86Y29
Domains : Interpro (EBI)BAGE   
Domain families : Pfam (Sanger)BAGE (PF08180)   
Domain families : Pfam (NCBI)pfam08180   
Conserved Domain (NCBI)BAGE3
DMDM Disease mutations85318
Blocks (Seattle)BAGE3
SuperfamilyQ86Y29
Peptide AtlasQ86Y29
HPRD10685
IPIIPI00329290   IPI00969510   
Protein Interaction databases
DIP (DOE-UCLA)Q86Y29
IntAct (EBI)Q86Y29
BioGRIDBAGE3
STRING (EMBL)BAGE3
ZODIACBAGE3
Ontologies - Pathways
QuickGOQ86Y29
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkBAGE3
Atlas of Cancer Signalling NetworkBAGE3
Wikipedia pathwaysBAGE3
Orthology - Evolution
OrthoDB85318
Phylogenetic Trees/Animal Genes : TreeFamBAGE3
HOVERGENQ86Y29
HOGENOMQ86Y29
Homologs : HomoloGeneBAGE3
Homology/Alignments : Family Browser (UCSC)BAGE3
Gene fusions - Rearrangements
Fusion : QuiverBAGE3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBAGE3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BAGE3
dbVarBAGE3
ClinVarBAGE3
1000_GenomesBAGE3 
Exome Variant ServerBAGE3
Varsome BrowserBAGE3
Genetic variants : HAPMAP85318
Genomic Variants (DGV)BAGE3 [DGVbeta]
DECIPHERBAGE3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBAGE3 
Mutations
ICGC Data PortalBAGE3 
TCGA Data PortalBAGE3 
Broad Tumor PortalBAGE3
OASIS PortalBAGE3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBAGE3
BioMutasearch BAGE3
DgiDB (Drug Gene Interaction Database)BAGE3
DoCM (Curated mutations)BAGE3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BAGE3 (select a term)
intoGenBAGE3
Cancer3DBAGE3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617777   
Orphanet
DisGeNETBAGE3
MedgenBAGE3
Genetic Testing Registry BAGE3
NextProtQ86Y29 [Medical]
TSGene85318
GENETestsBAGE3
Target ValidationBAGE3
Huge Navigator BAGE3 [HugePedia]
snp3D : Map Gene to Disease85318
BioCentury BCIQBAGE3
ClinGenBAGE3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85318
Chemical/Pharm GKB GenePA25244
Clinical trialBAGE3
Miscellaneous
canSAR (ICR)BAGE3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBAGE3
EVEXBAGE3
GoPubMedBAGE3
iHOPBAGE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:11:07 CEST 2018

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