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BAGE4 (BAGE family member 4)

Identity

Alias_namesmember 4
MLL3P
Alias_symbol (synonym)CT2.4
Other alias
HGNC (Hugo) BAGE4
LocusID (NCBI) 85317
Atlas_Id 747
Location 21p11.2  [Link to chromosome band 21p11]
Location_base_pair Starts at 10413532 and ends at 10491615 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BAGE4   15730
Cards
Entrez_Gene (NCBI)BAGE4  85317  BAGE family member 4
AliasesCT2.4; MLL3P
GeneCards (Weizmann)BAGE4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:10413532-10491615 [Contig_View]  BAGE4 [Vega]
TCGA cBioPortalBAGE4
AceView (NCBI)BAGE4
Genatlas (Paris)BAGE4
WikiGenes85317
SOURCE (Princeton)BAGE4
Genetics Home Reference (NIH)BAGE4
Genomic and cartography
GoldenPath hg38 (UCSC)BAGE4  -     chr21:10413532-10491615 +  21p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BAGE4  -     21p11.2   [Description]    (hg19-Feb_2009)
EnsemblBAGE4 - 21p11.2 [CytoView hg19]  BAGE4 - 21p11.2 [CytoView hg38]
Mapping of homologs : NCBIBAGE4 [Mapview hg19]  BAGE4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF339515 BC160157
RefSeq transcript (Entrez)NM_181704
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BAGE4
Cluster EST : UnigeneHs.545789 [ NCBI ]
CGAP (NCI)Hs.545789
Gene ExpressionBAGE4 [ NCBI-GEO ]   BAGE4 [ EBI - ARRAY_EXPRESS ]   BAGE4 [ SEEK ]   BAGE4 [ MEM ]
Gene Expression Viewer (FireBrowse)BAGE4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85317
GTEX Portal (Tissue expression)BAGE4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86Y28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86Y28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86Y28
Splice isoforms : SwissVarQ86Y28
PhosPhoSitePlusQ86Y28
Domains : Interpro (EBI)BAGE   
Domain families : Pfam (Sanger)BAGE (PF08180)   
Domain families : Pfam (NCBI)pfam08180   
Conserved Domain (NCBI)BAGE4
DMDM Disease mutations85317
Blocks (Seattle)BAGE4
SuperfamilyQ86Y28
Peptide AtlasQ86Y28
HPRD16536
IPIIPI00329289   IPI00884144   
Protein Interaction databases
DIP (DOE-UCLA)Q86Y28
IntAct (EBI)Q86Y28
BioGRIDBAGE4
STRING (EMBL)BAGE4
ZODIACBAGE4
Ontologies - Pathways
QuickGOQ86Y28
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkBAGE4
Atlas of Cancer Signalling NetworkBAGE4
Wikipedia pathwaysBAGE4
Orthology - Evolution
OrthoDB85317
Phylogenetic Trees/Animal Genes : TreeFamBAGE4
HOVERGENQ86Y28
HOGENOMQ86Y28
Homologs : HomoloGeneBAGE4
Homology/Alignments : Family Browser (UCSC)BAGE4
Gene fusions - Rearrangements
Tumor Fusion PortalBAGE4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBAGE4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BAGE4
dbVarBAGE4
ClinVarBAGE4
1000_GenomesBAGE4 
Exome Variant ServerBAGE4
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP85317
Genomic Variants (DGV)BAGE4 [DGVbeta]
DECIPHERBAGE4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBAGE4 
Mutations
ICGC Data PortalBAGE4 
TCGA Data PortalBAGE4 
Broad Tumor PortalBAGE4
OASIS PortalBAGE4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBAGE4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBAGE4
BioMutasearch BAGE4
DgiDB (Drug Gene Interaction Database)BAGE4
DoCM (Curated mutations)BAGE4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BAGE4 (select a term)
intoGenBAGE4
Cancer3DBAGE4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETBAGE4
MedgenBAGE4
Genetic Testing Registry BAGE4
NextProtQ86Y28 [Medical]
TSGene85317
GENETestsBAGE4
Target ValidationBAGE4
Huge Navigator BAGE4 [HugePedia]
snp3D : Map Gene to Disease85317
BioCentury BCIQBAGE4
ClinGenBAGE4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85317
Chemical/Pharm GKB GenePA25245
Clinical trialBAGE4
Miscellaneous
canSAR (ICR)BAGE4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBAGE4
EVEXBAGE4
GoPubMedBAGE4
iHOPBAGE4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:27:52 CET 2017

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