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BAGE5 (BAGE family member 5)

Identity

Alias_namesmember 5
Alias_symbol (synonym)CT2.5
Other alias
HGNC (Hugo) BAGE5
LocusID (NCBI) 85316
Atlas_Id 748
Location 21p11.2  [Link to chromosome band 21p11]
Location_base_pair Starts at 10413532 and ends at 10491615 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BAGE5   15732
Cards
Entrez_Gene (NCBI)BAGE5  85316  BAGE family member 5
AliasesCT2.5
GeneCards (Weizmann)BAGE5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:10413532-10491615 [Contig_View]  BAGE5 [Vega]
TCGA cBioPortalBAGE5
AceView (NCBI)BAGE5
Genatlas (Paris)BAGE5
WikiGenes85316
SOURCE (Princeton)BAGE5
Genetics Home Reference (NIH)BAGE5
Genomic and cartography
GoldenPath hg38 (UCSC)BAGE5  -     chr21:10413532-10491615 +  21p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BAGE5  -     21p11.2   [Description]    (hg19-Feb_2009)
EnsemblBAGE5 - 21p11.2 [CytoView hg19]  BAGE5 - 21p11.2 [CytoView hg38]
Mapping of homologs : NCBIBAGE5 [Mapview hg19]  BAGE5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF339516 BC156846
RefSeq transcript (Entrez)NM_182484
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BAGE5
Cluster EST : UnigeneHs.545789 [ NCBI ]
CGAP (NCI)Hs.545789
Gene ExpressionBAGE5 [ NCBI-GEO ]   BAGE5 [ EBI - ARRAY_EXPRESS ]   BAGE5 [ SEEK ]   BAGE5 [ MEM ]
Gene Expression Viewer (FireBrowse)BAGE5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85316
GTEX Portal (Tissue expression)BAGE5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86Y27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86Y27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86Y27
Splice isoforms : SwissVarQ86Y27
PhosPhoSitePlusQ86Y27
Domains : Interpro (EBI)BAGE   
Domain families : Pfam (Sanger)BAGE (PF08180)   
Domain families : Pfam (NCBI)pfam08180   
Conserved Domain (NCBI)BAGE5
DMDM Disease mutations85316
Blocks (Seattle)BAGE5
SuperfamilyQ86Y27
Peptide AtlasQ86Y27
HPRD16537
IPIIPI00334199   
Protein Interaction databases
DIP (DOE-UCLA)Q86Y27
IntAct (EBI)Q86Y27
BioGRIDBAGE5
STRING (EMBL)BAGE5
ZODIACBAGE5
Ontologies - Pathways
QuickGOQ86Y27
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkBAGE5
Atlas of Cancer Signalling NetworkBAGE5
Wikipedia pathwaysBAGE5
Orthology - Evolution
OrthoDB85316
Phylogenetic Trees/Animal Genes : TreeFamBAGE5
HOVERGENQ86Y27
HOGENOMQ86Y27
Homologs : HomoloGeneBAGE5
Homology/Alignments : Family Browser (UCSC)BAGE5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBAGE5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BAGE5
dbVarBAGE5
ClinVarBAGE5
1000_GenomesBAGE5 
Exome Variant ServerBAGE5
ExAC (Exome Aggregation Consortium)BAGE5 (select the gene name)
Genetic variants : HAPMAP85316
Genomic Variants (DGV)BAGE5 [DGVbeta]
DECIPHERBAGE5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBAGE5 
Mutations
ICGC Data PortalBAGE5 
TCGA Data PortalBAGE5 
Broad Tumor PortalBAGE5
OASIS PortalBAGE5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBAGE5
BioMutasearch BAGE5
DgiDB (Drug Gene Interaction Database)BAGE5
DoCM (Curated mutations)BAGE5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BAGE5 (select a term)
intoGenBAGE5
Cancer3DBAGE5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBAGE5
Genetic Testing Registry BAGE5
NextProtQ86Y27 [Medical]
TSGene85316
GENETestsBAGE5
Huge Navigator BAGE5 [HugePedia]
snp3D : Map Gene to Disease85316
BioCentury BCIQBAGE5
ClinGenBAGE5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85316
Chemical/Pharm GKB GenePA25246
Clinical trialBAGE5
Miscellaneous
canSAR (ICR)BAGE5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBAGE5
EVEXBAGE5
GoPubMedBAGE5
iHOPBAGE5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:07:29 CEST 2017

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