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BAHCC1 (BAH domain and coiled-coil containing 1)

Identity

Alias_symbol (synonym)KIAA1447
BAHD2
Other alias
HGNC (Hugo) BAHCC1
LocusID (NCBI) 57597
Atlas_Id 60698
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 79373521 and ends at 79433358 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BAHCC1 (17q25.3) / SFTA3 (14q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BAHCC1   29279
Cards
Entrez_Gene (NCBI)BAHCC1  57597  BAH domain and coiled-coil containing 1
AliasesBAHD2
GeneCards (Weizmann)BAHCC1
Ensembl hg19 (Hinxton)ENSG00000266074 [Gene_View]  chr17:79373521-79433358 [Contig_View]  BAHCC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000266074 [Gene_View]  chr17:79373521-79433358 [Contig_View]  BAHCC1 [Vega]
ICGC DataPortalENSG00000266074
TCGA cBioPortalBAHCC1
AceView (NCBI)BAHCC1
Genatlas (Paris)BAHCC1
WikiGenes57597
SOURCE (Princeton)BAHCC1
Genetics Home Reference (NIH)BAHCC1
Genomic and cartography
GoldenPath hg19 (UCSC)BAHCC1  -     chr17:79373521-79433358 +  17q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BAHCC1  -     17q25.3   [Description]    (hg38-Dec_2013)
EnsemblBAHCC1 - 17q25.3 [CytoView hg19]  BAHCC1 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIBAHCC1 [Mapview hg19]  BAHCC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB040880 AF086116 AK026711 AK056636 AL713748
RefSeq transcript (Entrez)NM_001080519 NM_001291324 NM_024696
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)BAHCC1
Cluster EST : UnigeneHs.514580 [ NCBI ]
CGAP (NCI)Hs.514580
Alternative Splicing GalleryENSG00000266074
Gene ExpressionBAHCC1 [ NCBI-GEO ]   BAHCC1 [ EBI - ARRAY_EXPRESS ]   BAHCC1 [ SEEK ]   BAHCC1 [ MEM ]
Gene Expression Viewer (FireBrowse)BAHCC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57597
GTEX Portal (Tissue expression)BAHCC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P281   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P281  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P281
Splice isoforms : SwissVarQ9P281
PhosPhoSitePlusQ9P281
Domaine pattern : Prosite (Expaxy)BAH (PS51038)   
Domains : Interpro (EBI)BAH_dom   
Domain families : Pfam (Sanger)BAH (PF01426)   
Domain families : Pfam (NCBI)pfam01426   
Domain families : Smart (EMBL)BAH (SM00439)  
Conserved Domain (NCBI)BAHCC1
DMDM Disease mutations57597
Blocks (Seattle)BAHCC1
SuperfamilyQ9P281
Human Protein AtlasENSG00000266074
Peptide AtlasQ9P281
IPIIPI00845508   IPI00003001   
Protein Interaction databases
DIP (DOE-UCLA)Q9P281
IntAct (EBI)Q9P281
FunCoupENSG00000266074
BioGRIDBAHCC1
STRING (EMBL)BAHCC1
ZODIACBAHCC1
Ontologies - Pathways
QuickGOQ9P281
Ontology : AmiGOchromatin binding  
Ontology : EGO-EBIchromatin binding  
NDEx NetworkBAHCC1
Atlas of Cancer Signalling NetworkBAHCC1
Wikipedia pathwaysBAHCC1
Orthology - Evolution
OrthoDB57597
GeneTree (enSembl)ENSG00000266074
Phylogenetic Trees/Animal Genes : TreeFamBAHCC1
HOVERGENQ9P281
HOGENOMQ9P281
Homologs : HomoloGeneBAHCC1
Homology/Alignments : Family Browser (UCSC)BAHCC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBAHCC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BAHCC1
dbVarBAHCC1
ClinVarBAHCC1
1000_GenomesBAHCC1 
Exome Variant ServerBAHCC1
ExAC (Exome Aggregation Consortium)BAHCC1 (select the gene name)
Genetic variants : HAPMAP57597
Genomic Variants (DGV)BAHCC1 [DGVbeta]
DECIPHER (Syndromes)17:79373521-79433358  ENSG00000266074
CONAN: Copy Number AnalysisBAHCC1 
Mutations
ICGC Data PortalBAHCC1 
TCGA Data PortalBAHCC1 
Broad Tumor PortalBAHCC1
OASIS PortalBAHCC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBAHCC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBAHCC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BAHCC1
DgiDB (Drug Gene Interaction Database)BAHCC1
DoCM (Curated mutations)BAHCC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BAHCC1 (select a term)
intoGenBAHCC1
Cancer3DBAHCC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBAHCC1
Genetic Testing Registry BAHCC1
NextProtQ9P281 [Medical]
TSGene57597
GENETestsBAHCC1
Huge Navigator BAHCC1 [HugePedia]
snp3D : Map Gene to Disease57597
BioCentury BCIQBAHCC1
ClinGenBAHCC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57597
Chemical/Pharm GKB GenePA128394719
Clinical trialBAHCC1
Miscellaneous
canSAR (ICR)BAHCC1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBAHCC1
EVEXBAHCC1
GoPubMedBAHCC1
iHOPBAHCC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:38 CET 2017

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