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BAHD1 (bromo adjacent homology domain containing 1)

Identity

Alias_symbol (synonym)KIAA0945
Other alias-
HGNC (Hugo) BAHD1
LocusID (NCBI) 22893
Atlas_Id 60699
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 40439721 and ends at 40468242 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BAHD1 (15q15.1) / BAHD1 (15q15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BAHD1   29153
Cards
Entrez_Gene (NCBI)BAHD1  22893  bromo adjacent homology domain containing 1
Aliases
GeneCards (Weizmann)BAHD1
Ensembl hg19 (Hinxton)ENSG00000140320 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140320 [Gene_View]  chr15:40439721-40468242 [Contig_View]  BAHD1 [Vega]
ICGC DataPortalENSG00000140320
TCGA cBioPortalBAHD1
AceView (NCBI)BAHD1
Genatlas (Paris)BAHD1
WikiGenes22893
SOURCE (Princeton)BAHD1
Genetics Home Reference (NIH)BAHD1
Genomic and cartography
GoldenPath hg38 (UCSC)BAHD1  -     chr15:40439721-40468242 +  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BAHD1  -     15q15.1   [Description]    (hg19-Feb_2009)
EnsemblBAHD1 - 15q15.1 [CytoView hg19]  BAHD1 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBIBAHD1 [Mapview hg19]  BAHD1 [Mapview hg38]
OMIM613880   
Gene and transcription
Genbank (Entrez)AB023162 AL833923 BC022782 BU740533 HY041603
RefSeq transcript (Entrez)NM_001301132 NM_014952
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BAHD1
Cluster EST : UnigeneHs.22109 [ NCBI ]
CGAP (NCI)Hs.22109
Alternative Splicing GalleryENSG00000140320
Gene ExpressionBAHD1 [ NCBI-GEO ]   BAHD1 [ EBI - ARRAY_EXPRESS ]   BAHD1 [ SEEK ]   BAHD1 [ MEM ]
Gene Expression Viewer (FireBrowse)BAHD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22893
GTEX Portal (Tissue expression)BAHD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBE0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBE0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBE0
Splice isoforms : SwissVarQ8TBE0
PhosPhoSitePlusQ8TBE0
Domaine pattern : Prosite (Expaxy)BAH (PS51038)   
Domains : Interpro (EBI)BAH_dom   
Domain families : Pfam (Sanger)BAH (PF01426)   
Domain families : Pfam (NCBI)pfam01426   
Domain families : Smart (EMBL)BAH (SM00439)  
Conserved Domain (NCBI)BAHD1
DMDM Disease mutations22893
Blocks (Seattle)BAHD1
SuperfamilyQ8TBE0
Human Protein AtlasENSG00000140320
Peptide AtlasQ8TBE0
HPRD12518
IPIIPI00797500   IPI00465088   IPI00848287   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBE0
IntAct (EBI)Q8TBE0
FunCoupENSG00000140320
BioGRIDBAHD1
STRING (EMBL)BAHD1
ZODIACBAHD1
Ontologies - Pathways
QuickGOQ8TBE0
Ontology : AmiGOchromatin  transcription regulatory region sequence-specific DNA binding  chromatin binding  protein binding  nucleoplasm  chromatin silencing complex  chromatin silencing  transcription, DNA-templated  covalent chromatin modification  heterochromatin assembly  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIchromatin  transcription regulatory region sequence-specific DNA binding  chromatin binding  protein binding  nucleoplasm  chromatin silencing complex  chromatin silencing  transcription, DNA-templated  covalent chromatin modification  heterochromatin assembly  negative regulation of transcription, DNA-templated  
NDEx NetworkBAHD1
Atlas of Cancer Signalling NetworkBAHD1
Wikipedia pathwaysBAHD1
Orthology - Evolution
OrthoDB22893
GeneTree (enSembl)ENSG00000140320
Phylogenetic Trees/Animal Genes : TreeFamBAHD1
HOVERGENQ8TBE0
HOGENOMQ8TBE0
Homologs : HomoloGeneBAHD1
Homology/Alignments : Family Browser (UCSC)BAHD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBAHD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BAHD1
dbVarBAHD1
ClinVarBAHD1
1000_GenomesBAHD1 
Exome Variant ServerBAHD1
ExAC (Exome Aggregation Consortium)BAHD1 (select the gene name)
Genetic variants : HAPMAP22893
Genomic Variants (DGV)BAHD1 [DGVbeta]
DECIPHERBAHD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBAHD1 
Mutations
ICGC Data PortalBAHD1 
TCGA Data PortalBAHD1 
Broad Tumor PortalBAHD1
OASIS PortalBAHD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBAHD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBAHD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BAHD1
DgiDB (Drug Gene Interaction Database)BAHD1
DoCM (Curated mutations)BAHD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BAHD1 (select a term)
intoGenBAHD1
Cancer3DBAHD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613880   
Orphanet
MedgenBAHD1
Genetic Testing Registry BAHD1
NextProtQ8TBE0 [Medical]
TSGene22893
GENETestsBAHD1
Target ValidationBAHD1
Huge Navigator BAHD1 [HugePedia]
snp3D : Map Gene to Disease22893
BioCentury BCIQBAHD1
ClinGenBAHD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22893
Chemical/Pharm GKB GenePA128394592
Clinical trialBAHD1
Miscellaneous
canSAR (ICR)BAHD1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBAHD1
EVEXBAHD1
GoPubMedBAHD1
iHOPBAHD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:11 CEST 2017

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