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BAMBI (BMP and activin membrane bound inhibitor)

Identity

Alias_namesBMP and activin membrane-bound inhibitor homolog (Xenopus laevis)
Alias_symbol (synonym)NMA
Other alias
HGNC (Hugo) BAMBI
LocusID (NCBI) 25805
Atlas_Id 754
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 28677495 and ends at 28682939 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BAMBI (10p12.1) / BAMBI (10p12.1)BAMBI (10p12.1) / COL15A1 (9q22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(10;16)(p12;p13) TXNDC11/BAMBI

External links

Nomenclature
HGNC (Hugo)BAMBI   30251
Cards
Entrez_Gene (NCBI)BAMBI  25805  BMP and activin membrane bound inhibitor
AliasesNMA
GeneCards (Weizmann)BAMBI
Ensembl hg19 (Hinxton)ENSG00000095739 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000095739 [Gene_View]  ENSG00000095739 [Sequence]  chr10:28677495-28682939 [Contig_View]  BAMBI [Vega]
ICGC DataPortalENSG00000095739
TCGA cBioPortalBAMBI
AceView (NCBI)BAMBI
Genatlas (Paris)BAMBI
WikiGenes25805
SOURCE (Princeton)BAMBI
Genetics Home Reference (NIH)BAMBI
Genomic and cartography
GoldenPath hg38 (UCSC)BAMBI  -     chr10:28677495-28682939 +  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BAMBI  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblBAMBI - 6p21.31 [CytoView hg19]  BAMBI - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBIBAMBI [Mapview hg19]  BAMBI [Mapview hg38]
OMIM604444   
Gene and transcription
Genbank (Entrez)AI680996 AK223065 AK290639 BC019252 BQ640107
RefSeq transcript (Entrez)NM_012342
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BAMBI
Cluster EST : UnigeneHs.533336 [ NCBI ]
CGAP (NCI)Hs.533336
Alternative Splicing GalleryENSG00000095739
Gene ExpressionBAMBI [ NCBI-GEO ]   BAMBI [ EBI - ARRAY_EXPRESS ]   BAMBI [ SEEK ]   BAMBI [ MEM ]
Gene Expression Viewer (FireBrowse)BAMBI [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25805
GTEX Portal (Tissue expression)BAMBI
Human Protein AtlasENSG00000095739-BAMBI [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13145   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13145  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13145
Splice isoforms : SwissVarQ13145
PhosPhoSitePlusQ13145
Domains : Interpro (EBI)BAMBI   
Domain families : Pfam (Sanger)BAMBI (PF06211)   
Domain families : Pfam (NCBI)pfam06211   
Conserved Domain (NCBI)BAMBI
DMDM Disease mutations25805
Blocks (Seattle)BAMBI
SuperfamilyQ13145
Human Protein Atlas [tissue]ENSG00000095739-BAMBI [tissue]
Peptide AtlasQ13145
HPRD05117
IPIIPI00011899   IPI01011801   
Protein Interaction databases
DIP (DOE-UCLA)Q13145
IntAct (EBI)Q13145
FunCoupENSG00000095739
BioGRIDBAMBI
STRING (EMBL)BAMBI
ZODIACBAMBI
Ontologies - Pathways
QuickGOQ13145
Ontology : AmiGOfrizzled binding  type II transforming growth factor beta receptor binding  cytoplasm  plasma membrane  plasma membrane  positive regulation of cell proliferation  regulation of cell shape  positive regulation of epithelial to mesenchymal transition  integral component of membrane  cell migration  negative regulation of transforming growth factor beta receptor signaling pathway  negative regulation of transforming growth factor beta receptor signaling pathway  negative regulation of transforming growth factor beta receptor signaling pathway  positive regulation of protein binding  positive regulation of transcription, DNA-templated  positive regulation of canonical Wnt signaling pathway  positive regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIfrizzled binding  type II transforming growth factor beta receptor binding  cytoplasm  plasma membrane  plasma membrane  positive regulation of cell proliferation  regulation of cell shape  positive regulation of epithelial to mesenchymal transition  integral component of membrane  cell migration  negative regulation of transforming growth factor beta receptor signaling pathway  negative regulation of transforming growth factor beta receptor signaling pathway  negative regulation of transforming growth factor beta receptor signaling pathway  positive regulation of protein binding  positive regulation of transcription, DNA-templated  positive regulation of canonical Wnt signaling pathway  positive regulation of canonical Wnt signaling pathway  
Pathways : KEGGWnt signaling pathway    TGF-beta signaling pathway   
NDEx NetworkBAMBI
Atlas of Cancer Signalling NetworkBAMBI
Wikipedia pathwaysBAMBI
Orthology - Evolution
OrthoDB25805
GeneTree (enSembl)ENSG00000095739
Phylogenetic Trees/Animal Genes : TreeFamBAMBI
HOVERGENQ13145
HOGENOMQ13145
Homologs : HomoloGeneBAMBI
Homology/Alignments : Family Browser (UCSC)BAMBI
Gene fusions - Rearrangements
Fusion : QuiverBAMBI
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBAMBI [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BAMBI
dbVarBAMBI
ClinVarBAMBI
1000_GenomesBAMBI 
Exome Variant ServerBAMBI
ExAC (Exome Aggregation Consortium)ENSG00000095739
GNOMAD BrowserENSG00000095739
Varsome BrowserBAMBI
Genetic variants : HAPMAP25805
Genomic Variants (DGV)BAMBI [DGVbeta]
DECIPHERBAMBI [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBAMBI 
Mutations
ICGC Data PortalBAMBI 
TCGA Data PortalBAMBI 
Broad Tumor PortalBAMBI
OASIS PortalBAMBI [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBAMBI  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBAMBI
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BAMBI
DgiDB (Drug Gene Interaction Database)BAMBI
DoCM (Curated mutations)BAMBI (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BAMBI (select a term)
intoGenBAMBI
Cancer3DBAMBI(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604444   
Orphanet
DisGeNETBAMBI
MedgenBAMBI
Genetic Testing Registry BAMBI
NextProtQ13145 [Medical]
TSGene25805
GENETestsBAMBI
Target ValidationBAMBI
Huge Navigator BAMBI [HugePedia]
snp3D : Map Gene to Disease25805
BioCentury BCIQBAMBI
ClinGenBAMBI
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25805
Chemical/Pharm GKB GenePA134909139
Clinical trialBAMBI
Miscellaneous
canSAR (ICR)BAMBI (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBAMBI
EVEXBAMBI
GoPubMedBAMBI
iHOPBAMBI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Aug 16 10:49:02 CEST 2018
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