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BANF1 (barrier to autointegration factor 1)

Identity

Other aliasBAF
BCRP1
D14S1460
NGPS
HGNC (Hugo) BANF1
LocusID (NCBI) 8815
Atlas_Id 57801
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 66002079 and ends at 66004146 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BANF1   17397
Cards
Entrez_Gene (NCBI)BANF1  8815  barrier to autointegration factor 1
AliasesBAF; BCRP1; D14S1460; NGPS
GeneCards (Weizmann)BANF1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr11:66002079-66004146 [Contig_View]  BANF1 [Vega]
TCGA cBioPortalBANF1
AceView (NCBI)BANF1
Genatlas (Paris)BANF1
WikiGenes8815
SOURCE (Princeton)BANF1
Genetics Home Reference (NIH)BANF1
Genomic and cartography
GoldenPath hg38 (UCSC)BANF1  -     chr11:66002079-66004146 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BANF1  -     11q13.1   [Description]    (hg19-Feb_2009)
BANF1 - 11q13.1 [CytoView hg19]  BANF1 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIBANF1 [Mapview hg19]  BANF1 [Mapview hg38]
OMIM603811   614008   
Gene and transcription
Genbank (Entrez)AF044773 AF068235 AF070447 AK311961 BC005942
RefSeq transcript (Entrez)NM_001143985 NM_003860
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BANF1
Cluster EST : UnigeneHs.433759 [ NCBI ]
CGAP (NCI)Hs.433759
Gene ExpressionBANF1 [ NCBI-GEO ]   BANF1 [ EBI - ARRAY_EXPRESS ]   BANF1 [ SEEK ]   BANF1 [ MEM ]
Gene Expression Viewer (FireBrowse)BANF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8815
GTEX Portal (Tissue expression)BANF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75531   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75531  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75531
Splice isoforms : SwissVarO75531
PhosPhoSitePlusO75531
Domains : Interpro (EBI)BAF_prot    BAF_sf   
Domain families : Pfam (Sanger)BAF (PF02961)   
Domain families : Pfam (NCBI)pfam02961   
Domain families : Smart (EMBL)BAF (SM01023)  
Domain structure : Prodom (Prabi Lyon)PD019964 (PD019964)   
Conserved Domain (NCBI)BANF1
DMDM Disease mutations8815
Blocks (Seattle)BANF1
PDB (RSDB)1CI4    1QCK    2BZF    2EZX    2EZY    2EZZ    2ODG   
PDB Europe1CI4    1QCK    2BZF    2EZX    2EZY    2EZZ    2ODG   
PDB (PDBSum)1CI4    1QCK    2BZF    2EZX    2EZY    2EZZ    2ODG   
PDB (IMB)1CI4    1QCK    2BZF    2EZX    2EZY    2EZZ    2ODG   
Structural Biology KnowledgeBase1CI4    1QCK    2BZF    2EZX    2EZY    2EZZ    2ODG   
SCOP (Structural Classification of Proteins)1CI4    1QCK    2BZF    2EZX    2EZY    2EZZ    2ODG   
CATH (Classification of proteins structures)1CI4    1QCK    2BZF    2EZX    2EZY    2EZZ    2ODG   
SuperfamilyO75531
Peptide AtlasO75531
IPIIPI00026087   IPI00979407   
Protein Interaction databases
DIP (DOE-UCLA)O75531
IntAct (EBI)O75531
BioGRIDBANF1
STRING (EMBL)BANF1
ZODIACBANF1
Ontologies - Pathways
QuickGOO75531
Ontology : AmiGOcondensed chromosome  DNA binding  protein binding  nucleus  nucleus  nuclear envelope  nucleoplasm  nucleoplasm  cytoplasm  cytosol  cytosol  mitotic nuclear envelope reassembly  protein C-terminus binding  response to virus  DNA integration  enzyme binding  identical protein binding  protein homodimerization activity  negative regulation of viral genome replication  protein N-terminus binding  nuclear transport  establishment of integrated proviral latency  LEM domain binding  
Ontology : EGO-EBIcondensed chromosome  DNA binding  protein binding  nucleus  nucleus  nuclear envelope  nucleoplasm  nucleoplasm  cytoplasm  cytosol  cytosol  mitotic nuclear envelope reassembly  protein C-terminus binding  response to virus  DNA integration  enzyme binding  identical protein binding  protein homodimerization activity  negative regulation of viral genome replication  protein N-terminus binding  nuclear transport  establishment of integrated proviral latency  LEM domain binding  
NDEx NetworkBANF1
Atlas of Cancer Signalling NetworkBANF1
Wikipedia pathwaysBANF1
Orthology - Evolution
OrthoDB8815
Phylogenetic Trees/Animal Genes : TreeFamBANF1
HOGENOMO75531
Homologs : HomoloGeneBANF1
Homology/Alignments : Family Browser (UCSC)BANF1
Gene fusions - Rearrangements
Fusion : QuiverBANF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBANF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BANF1
dbVarBANF1
ClinVarBANF1
1000_GenomesBANF1 
Exome Variant ServerBANF1
Varsome BrowserBANF1
Genetic variants : HAPMAP8815
Genomic Variants (DGV)BANF1 [DGVbeta]
DECIPHERBANF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBANF1 
Mutations
ICGC Data PortalBANF1 
TCGA Data PortalBANF1 
Broad Tumor PortalBANF1
OASIS PortalBANF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBANF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBANF1
BioMutasearch BANF1
DgiDB (Drug Gene Interaction Database)BANF1
DoCM (Curated mutations)BANF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BANF1 (select a term)
intoGenBANF1
Cancer3DBANF1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603811    614008   
Orphanet
DisGeNETBANF1
MedgenBANF1
Genetic Testing Registry BANF1
NextProtO75531 [Medical]
TSGene8815
GENETestsBANF1
Target ValidationBANF1
Huge Navigator BANF1 [HugePedia]
snp3D : Map Gene to Disease8815
BioCentury BCIQBANF1
ClinGenBANF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8815
Chemical/Pharm GKB GenePA134903639
Clinical trialBANF1
Miscellaneous
canSAR (ICR)BANF1 (select the gene name)
DataMed IndexBANF1
Probes
Litterature
PubMed106 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBANF1
EVEXBANF1
GoPubMedBANF1
iHOPBANF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu May 2 12:40:43 CEST 2019

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