Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BANF2 (barrier to autointegration factor 2)

Identity

Alias_namesC20orf179
chromosome 20 open reading frame 179
Alias_symbol (synonym)dJ803K15.1
BAF-L
BAFL
BAF2
Other alias
HGNC (Hugo) BANF2
LocusID (NCBI) 140836
Atlas_Id 60705
Location 20p12.1  [Link to chromosome band 20p12]
Location_base_pair Starts at 17699948 and ends at 17735872 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BANF2   16172
Cards
Entrez_Gene (NCBI)BANF2  140836  barrier to autointegration factor 2
AliasesBAF-L; BAF2; BAFL; C20orf179
GeneCards (Weizmann)BANF2
Ensembl hg19 (Hinxton)ENSG00000125888 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125888 [Gene_View]  chr20:17699948-17735872 [Contig_View]  BANF2 [Vega]
ICGC DataPortalENSG00000125888
TCGA cBioPortalBANF2
AceView (NCBI)BANF2
Genatlas (Paris)BANF2
WikiGenes140836
SOURCE (Princeton)BANF2
Genetics Home Reference (NIH)BANF2
Genomic and cartography
GoldenPath hg38 (UCSC)BANF2  -     chr20:17699948-17735872 +  20p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BANF2  -     20p12.1   [Description]    (hg19-Feb_2009)
EnsemblBANF2 - 20p12.1 [CytoView hg19]  BANF2 - 20p12.1 [CytoView hg38]
Mapping of homologs : NCBIBANF2 [Mapview hg19]  BANF2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA394107 AW022487 BC054871 BC062735 HM005625
RefSeq transcript (Entrez)NM_001014977 NM_001159495 NM_178477
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BANF2
Cluster EST : UnigeneHs.115366 [ NCBI ]
CGAP (NCI)Hs.115366
Alternative Splicing GalleryENSG00000125888
Gene ExpressionBANF2 [ NCBI-GEO ]   BANF2 [ EBI - ARRAY_EXPRESS ]   BANF2 [ SEEK ]   BANF2 [ MEM ]
Gene Expression Viewer (FireBrowse)BANF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140836
GTEX Portal (Tissue expression)BANF2
Human Protein AtlasENSG00000125888-BANF2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H503   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H503  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H503
Splice isoforms : SwissVarQ9H503
PhosPhoSitePlusQ9H503
Domains : Interpro (EBI)BAF_prot   
Domain families : Pfam (Sanger)BAF (PF02961)   
Domain families : Pfam (NCBI)pfam02961   
Domain families : Smart (EMBL)BAF (SM01023)  
Domain structure : Prodom (Prabi Lyon)PD019964 (PD019964)   
Conserved Domain (NCBI)BANF2
DMDM Disease mutations140836
Blocks (Seattle)BANF2
SuperfamilyQ9H503
Human Protein Atlas [tissue]ENSG00000125888-BANF2 [tissue]
Peptide AtlasQ9H503
HPRD12759
IPIIPI00014735   IPI00929710   IPI00796042   
Protein Interaction databases
DIP (DOE-UCLA)Q9H503
IntAct (EBI)Q9H503
FunCoupENSG00000125888
BioGRIDBANF2
STRING (EMBL)BANF2
ZODIACBANF2
Ontologies - Pathways
QuickGOQ9H503
Ontology : AmiGODNA binding  nucleus  cytoplasm  
Ontology : EGO-EBIDNA binding  nucleus  cytoplasm  
NDEx NetworkBANF2
Atlas of Cancer Signalling NetworkBANF2
Wikipedia pathwaysBANF2
Orthology - Evolution
OrthoDB140836
GeneTree (enSembl)ENSG00000125888
Phylogenetic Trees/Animal Genes : TreeFamBANF2
HOVERGENQ9H503
HOGENOMQ9H503
Homologs : HomoloGeneBANF2
Homology/Alignments : Family Browser (UCSC)BANF2
Gene fusions - Rearrangements
Tumor Fusion PortalBANF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBANF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BANF2
dbVarBANF2
ClinVarBANF2
1000_GenomesBANF2 
Exome Variant ServerBANF2
ExAC (Exome Aggregation Consortium)ENSG00000125888
GNOMAD BrowserENSG00000125888
Genetic variants : HAPMAP140836
Genomic Variants (DGV)BANF2 [DGVbeta]
DECIPHERBANF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBANF2 
Mutations
ICGC Data PortalBANF2 
TCGA Data PortalBANF2 
Broad Tumor PortalBANF2
OASIS PortalBANF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBANF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBANF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BANF2
DgiDB (Drug Gene Interaction Database)BANF2
DoCM (Curated mutations)BANF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BANF2 (select a term)
intoGenBANF2
Cancer3DBANF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETBANF2
MedgenBANF2
Genetic Testing Registry BANF2
NextProtQ9H503 [Medical]
TSGene140836
GENETestsBANF2
Target ValidationBANF2
Huge Navigator BANF2 [HugePedia]
snp3D : Map Gene to Disease140836
BioCentury BCIQBANF2
ClinGenBANF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140836
Chemical/Pharm GKB GenePA162377348
Clinical trialBANF2
Miscellaneous
canSAR (ICR)BANF2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBANF2
EVEXBANF2
GoPubMedBANF2
iHOPBANF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:12 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.