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BANK1 (B-cell scaffold protein with ankyrin repeats 1)

Identity

Alias_symbol (synonym)BANK
FLJ20706
Other alias
HGNC (Hugo) BANK1
LocusID (NCBI) 55024
Atlas_Id 55163
Location 4q24  [Link to chromosome band 4q24]
Location_base_pair Starts at 102734983 and ends at 102995969 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARHGAP24 (4q21.23) / BANK1 (4q24)CMPK1 (1p33) / BANK1 (4q24)IGH (14q32.33) / BANK1 (4q24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BANK1   18233
Cards
Entrez_Gene (NCBI)BANK1  55024  B-cell scaffold protein with ankyrin repeats 1
AliasesBANK
GeneCards (Weizmann)BANK1
Ensembl hg19 (Hinxton)ENSG00000153064 [Gene_View]  chr4:102734983-102995969 [Contig_View]  BANK1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000153064 [Gene_View]  chr4:102734983-102995969 [Contig_View]  BANK1 [Vega]
ICGC DataPortalENSG00000153064
TCGA cBioPortalBANK1
AceView (NCBI)BANK1
Genatlas (Paris)BANK1
WikiGenes55024
SOURCE (Princeton)BANK1
Genetics Home Reference (NIH)BANK1
Genomic and cartography
GoldenPath hg19 (UCSC)BANK1  -     chr4:102734983-102995969 +  4q24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BANK1  -     4q24   [Description]    (hg38-Dec_2013)
EnsemblBANK1 - 4q24 [CytoView hg19]  BANK1 - 4q24 [CytoView hg38]
Mapping of homologs : NCBIBANK1 [Mapview hg19]  BANK1 [Mapview hg38]
OMIM152700   610292   
Gene and transcription
Genbank (Entrez)AA768944 AB063170 AI864790 AK000713 AK091523
RefSeq transcript (Entrez)NM_001083907 NM_001127507 NM_017935
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_015824 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)BANK1
Cluster EST : UnigeneHs.480400 [ NCBI ]
CGAP (NCI)Hs.480400
Alternative Splicing GalleryENSG00000153064
Gene ExpressionBANK1 [ NCBI-GEO ]   BANK1 [ EBI - ARRAY_EXPRESS ]   BANK1 [ SEEK ]   BANK1 [ MEM ]
Gene Expression Viewer (FireBrowse)BANK1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55024
GTEX Portal (Tissue expression)BANK1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDB2
Splice isoforms : SwissVarQ8NDB2
PhosPhoSitePlusQ8NDB2
Domaine pattern : Prosite (Expaxy)DBB (PS51376)   
Domains : Interpro (EBI)Ankyrin_rpt-contain_dom    DBB_domain   
Domain families : Pfam (Sanger)DBB (PF14545)   
Domain families : Pfam (NCBI)pfam14545   
Conserved Domain (NCBI)BANK1
DMDM Disease mutations55024
Blocks (Seattle)BANK1
SuperfamilyQ8NDB2
Human Protein AtlasENSG00000153064
Peptide AtlasQ8NDB2
HPRD09819
IPIIPI00179337   IPI00787141   IPI00787434   IPI00895834   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDB2
IntAct (EBI)Q8NDB2
FunCoupENSG00000153064
BioGRIDBANK1
STRING (EMBL)BANK1
ZODIACBANK1
Ontologies - Pathways
QuickGOQ8NDB2
Ontology : AmiGOB cell activation  positive regulation of MAPK cascade  negative regulation of translational initiation  negative regulation of B cell activation  negative regulation of protein kinase B signaling  negative regulation of interleukin-6 secretion  
Ontology : EGO-EBIB cell activation  positive regulation of MAPK cascade  negative regulation of translational initiation  negative regulation of B cell activation  negative regulation of protein kinase B signaling  negative regulation of interleukin-6 secretion  
NDEx NetworkBANK1
Atlas of Cancer Signalling NetworkBANK1
Wikipedia pathwaysBANK1
Orthology - Evolution
OrthoDB55024
GeneTree (enSembl)ENSG00000153064
Phylogenetic Trees/Animal Genes : TreeFamBANK1
HOVERGENQ8NDB2
HOGENOMQ8NDB2
Homologs : HomoloGeneBANK1
Homology/Alignments : Family Browser (UCSC)BANK1
Gene fusions - Rearrangements
Fusion : MitelmanIGH/BANK1 [14q32.33/4q24]  [t(4;14)(q24;q32)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBANK1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BANK1
dbVarBANK1
ClinVarBANK1
1000_GenomesBANK1 
Exome Variant ServerBANK1
ExAC (Exome Aggregation Consortium)BANK1 (select the gene name)
Genetic variants : HAPMAP55024
Genomic Variants (DGV)BANK1 [DGVbeta]
DECIPHER (Syndromes)4:102734983-102995969  ENSG00000153064
CONAN: Copy Number AnalysisBANK1 
Mutations
ICGC Data PortalBANK1 
TCGA Data PortalBANK1 
Broad Tumor PortalBANK1
OASIS PortalBANK1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBANK1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBANK1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BANK1
DgiDB (Drug Gene Interaction Database)BANK1
DoCM (Curated mutations)BANK1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BANK1 (select a term)
intoGenBANK1
Cancer3DBANK1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM152700    610292   
Orphanet
MedgenBANK1
Genetic Testing Registry BANK1
NextProtQ8NDB2 [Medical]
TSGene55024
GENETestsBANK1
Huge Navigator BANK1 [HugePedia]
snp3D : Map Gene to Disease55024
BioCentury BCIQBANK1
ClinGenBANK1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55024
Chemical/Pharm GKB GenePA128394677
Clinical trialBANK1
Miscellaneous
canSAR (ICR)BANK1 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBANK1
EVEXBANK1
GoPubMedBANK1
iHOPBANK1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:57:18 CET 2017

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