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BANP (BTG3 associated nuclear protein)

Identity

Alias (NCBI)BEND1
SMAR1
SMARBP1
HGNC (Hugo) BANP
HGNC Alias symbSMARBP1
SMAR1
FLJ20538
DKFZp761H172
FLJ10177
BEND1
HGNC Alias nameBEN domain containing 1
LocusID (NCBI) 54971
Atlas_Id 50829
Location 16q24.2  [Link to chromosome band 16q24]
Location_base_pair Starts at 87951434 and ends at 88077316 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BANP (16q24.2) / NID2 (14q22.1)BANP (16q24.2) / RHOD (11q13.2)BANP (16q24.2) / SLC7A5 (16q24.2)
PDIA6 (2p25.1) / BANP (16q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)BANP   13450
Cards
Entrez_Gene (NCBI)BANP    BTG3 associated nuclear protein
AliasesBEND1; SMAR1; SMARBP1
GeneCards (Weizmann)BANP
Ensembl hg19 (Hinxton)ENSG00000172530 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172530 [Gene_View]  ENSG00000172530 [Sequence]  chr16:87951434-88077316 [Contig_View]  BANP [Vega]
ICGC DataPortalENSG00000172530
TCGA cBioPortalBANP
AceView (NCBI)BANP
Genatlas (Paris)BANP
SOURCE (Princeton)BANP
Genetics Home Reference (NIH)BANP
Genomic and cartography
GoldenPath hg38 (UCSC)BANP  -     chr16:87951434-88077316 +  16q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BANP  -     16q24.2   [Description]    (hg19-Feb_2009)
GoldenPathBANP - 16q24.2 [CytoView hg19]  BANP - 16q24.2 [CytoView hg38]
ImmunoBaseENSG00000172530
genome Data Viewer NCBIBANP [Mapview hg19]  
OMIM611564   
Gene and transcription
Genbank (Entrez)AK001039 AK094158 AK125232 AK293472 AK297945
RefSeq transcript (Entrez)NM_001173539 NM_001173540 NM_001173541 NM_001173542 NM_001173543 NM_001384916 NM_001384918 NM_001384919 NM_001384920 NM_001384921 NM_001384922 NM_001384923 NM_001384925 NM_001384926 NM_001384927 NM_001384928 NM_001384929 NM_001384931 NM_001384935 NM_001384936 NM_001384937 NM_001384938 NM_001384939 NM_001384940 NM_001384941 NM_001384942 NM_001384943 NM_001384944 NM_001386991 NM_001386992 NM_017869 NM_079837
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BANP
Alternative Splicing GalleryENSG00000172530
Gene ExpressionBANP [ NCBI-GEO ]   BANP [ EBI - ARRAY_EXPRESS ]   BANP [ SEEK ]   BANP [ MEM ]
Gene Expression Viewer (FireBrowse)BANP [ Firebrowse - Broad ]
GenevisibleExpression of BANP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54971
GTEX Portal (Tissue expression)BANP
Human Protein AtlasENSG00000172530-BANP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9N5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9N5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9N5
Splice isoforms : SwissVarQ8N9N5
PhosPhoSitePlusQ8N9N5
Domaine pattern : Prosite (Expaxy)BEN (PS51457)   
Domains : Interpro (EBI)BANP    BEN_domain   
Domain families : Pfam (Sanger)BEN (PF10523)   
Domain families : Pfam (NCBI)pfam10523   
Domain families : Smart (EMBL)BEN (SM01025)  
Conserved Domain (NCBI)BANP
Blocks (Seattle)BANP
SuperfamilyQ8N9N5
Human Protein Atlas [tissue]ENSG00000172530-BANP [tissue]
Peptide AtlasQ8N9N5
HPRD16538
IPIIPI00167773   IPI00218489   IPI00853021   IPI00852834   IPI00017643   IPI01021544   IPI00852875   IPI00952793   IPI00956625   IPI00853175   IPI01018801   IPI00852943   IPI01014470   IPI00976862   IPI00332572   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9N5
IntAct (EBI)Q8N9N5
BioGRIDBANP
STRING (EMBL)BANP
ZODIACBANP
Ontologies - Pathways
QuickGOQ8N9N5
Ontology : AmiGODNA binding  protein binding  nucleoplasm  nucleoplasm  chromatin organization  cell cycle  multicellular organism development  nuclear body  protein localization to nucleus  negative regulation of protein catabolic process  positive regulation of transcription, DNA-templated  regulation of signal transduction by p53 class mediator  
Ontology : EGO-EBIDNA binding  protein binding  nucleoplasm  nucleoplasm  chromatin organization  cell cycle  multicellular organism development  nuclear body  protein localization to nucleus  negative regulation of protein catabolic process  positive regulation of transcription, DNA-templated  regulation of signal transduction by p53 class mediator  
NDEx NetworkBANP
Atlas of Cancer Signalling NetworkBANP
Wikipedia pathwaysBANP
Orthology - Evolution
OrthoDB54971
GeneTree (enSembl)ENSG00000172530
Phylogenetic Trees/Animal Genes : TreeFamBANP
HOGENOMQ8N9N5
Homologs : HomoloGeneBANP
Homology/Alignments : Family Browser (UCSC)BANP
Gene fusions - Rearrangements
Fusion : QuiverBANP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBANP [hg38]
dbVarBANP
ClinVarBANP
MonarchBANP
1000_GenomesBANP 
Exome Variant ServerBANP
GNOMAD BrowserENSG00000172530
Varsome BrowserBANP
Genomic Variants (DGV)BANP [DGVbeta]
DECIPHERBANP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBANP 
Mutations
ICGC Data PortalBANP 
TCGA Data PortalBANP 
Broad Tumor PortalBANP
OASIS PortalBANP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBANP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBANP
Mutations and Diseases : HGMDBANP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BANP
DgiDB (Drug Gene Interaction Database)BANP
DoCM (Curated mutations)BANP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BANP (select a term)
intoGenBANP
Cancer3DBANP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611564   
Orphanet
DisGeNETBANP
MedgenBANP
Genetic Testing Registry BANP
NextProtQ8N9N5 [Medical]
GENETestsBANP
Target ValidationBANP
Huge Navigator BANP [HugePedia]
ClinGenBANP
Clinical trials, drugs, therapy
MyCancerGenomeBANP
Protein Interactions : CTD
Pharm GKB GenePA134933411
PharosQ8N9N5
Clinical trialBANP
Miscellaneous
canSAR (ICR)BANP (select the gene name)
HarmonizomeBANP
DataMed IndexBANP
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBANP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:12:28 CET 2021

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