Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BANP (BTG3 associated nuclear protein)

Identity

Alias_symbol (synonym)SMARBP1
SMAR1
FLJ20538
DKFZp761H172
FLJ10177
BEND1
Other alias
HGNC (Hugo) BANP
LocusID (NCBI) 54971
Atlas_Id 50829
Location 16q24.2  [Link to chromosome band 16q24]
Location_base_pair Starts at 87951432 and ends at 88077318 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		BANP (16q24.2) / NID2 (14q22.1)BANP (16q24.2) / RHOD (11q13.2)BANP (16q24.2) / SLC7A5 (16q24.2)
PDIA6 (2p25.1) / BANP (16q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BANP   13450
Cards
Entrez_Gene (NCBI)BANP  54971  BTG3 associated nuclear protein
AliasesBEND1; SMAR1; SMARBP1
GeneCards (Weizmann)BANP
Ensembl hg19 (Hinxton)ENSG00000172530 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172530 [Gene_View]  chr16:87951432-88077318 [Contig_View]  BANP [Vega]
ICGC DataPortalENSG00000172530
TCGA cBioPortalBANP
AceView (NCBI)BANP
Genatlas (Paris)BANP
WikiGenes54971
SOURCE (Princeton)BANP
Genetics Home Reference (NIH)BANP
Genomic and cartography
GoldenPath hg38 (UCSC)BANP  -     chr16:87951432-88077318 +  16q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BANP  -     16q24.2   [Description]    (hg19-Feb_2009)
EnsemblBANP - 16q24.2 [CytoView hg19]  BANP - 16q24.2 [CytoView hg38]
Mapping of homologs : NCBIBANP [Mapview hg19]  BANP [Mapview hg38]
OMIM611564   
Gene and transcription
Genbank (Entrez)AK001039 AK094158 AK125232 AK293472 AK297945
RefSeq transcript (Entrez)NM_001173539 NM_001173540 NM_001173541 NM_001173542 NM_001173543 NM_017869 NM_079837
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BANP
Cluster EST : UnigeneHs.461705 [ NCBI ]
CGAP (NCI)Hs.461705
Alternative Splicing GalleryENSG00000172530
Gene ExpressionBANP [ NCBI-GEO ]   BANP [ EBI - ARRAY_EXPRESS ]   BANP [ SEEK ]   BANP [ MEM ]
Gene Expression Viewer (FireBrowse)BANP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54971
GTEX Portal (Tissue expression)BANP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9N5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9N5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9N5
Splice isoforms : SwissVarQ8N9N5
PhosPhoSitePlusQ8N9N5
Domaine pattern : Prosite (Expaxy)BEN (PS51457)   
Domains : Interpro (EBI)BEN_domain   
Domain families : Pfam (Sanger)BEN (PF10523)   
Domain families : Pfam (NCBI)pfam10523   
Domain families : Smart (EMBL)BEN (SM01025)  
Conserved Domain (NCBI)BANP
DMDM Disease mutations54971
Blocks (Seattle)BANP
SuperfamilyQ8N9N5
Human Protein AtlasENSG00000172530
Peptide AtlasQ8N9N5
HPRD16538
IPIIPI00167773   IPI00218489   IPI00853021   IPI00852834   IPI00017643   IPI01021544   IPI00852875   IPI00952793   IPI00956625   IPI00853175   IPI01018801   IPI00852943   IPI01014470   IPI00976862   IPI00332572   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9N5
IntAct (EBI)Q8N9N5
FunCoupENSG00000172530
BioGRIDBANP
STRING (EMBL)BANP
ZODIACBANP
Ontologies - Pathways
QuickGOQ8N9N5
Ontology : AmiGOp53 binding  DNA binding  protein binding  nucleoplasm  nucleoplasm  transcription, DNA-templated  cell cycle  multicellular organism development  covalent chromatin modification  nuclear body  protein localization to nucleus  negative regulation of protein catabolic process  positive regulation of transcription, DNA-templated  regulation of signal transduction by p53 class mediator  
Ontology : EGO-EBIp53 binding  DNA binding  protein binding  nucleoplasm  nucleoplasm  transcription, DNA-templated  cell cycle  multicellular organism development  covalent chromatin modification  nuclear body  protein localization to nucleus  negative regulation of protein catabolic process  positive regulation of transcription, DNA-templated  regulation of signal transduction by p53 class mediator  
NDEx NetworkBANP
Atlas of Cancer Signalling NetworkBANP
Wikipedia pathwaysBANP
Orthology - Evolution
OrthoDB54971
GeneTree (enSembl)ENSG00000172530
Phylogenetic Trees/Animal Genes : TreeFamBANP
HOVERGENQ8N9N5
HOGENOMQ8N9N5
Homologs : HomoloGeneBANP
Homology/Alignments : Family Browser (UCSC)BANP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBANP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BANP
dbVarBANP
ClinVarBANP
1000_GenomesBANP 
Exome Variant ServerBANP
ExAC (Exome Aggregation Consortium)BANP (select the gene name)
Genetic variants : HAPMAP54971
Genomic Variants (DGV)BANP [DGVbeta]
DECIPHERBANP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBANP 
Mutations
ICGC Data PortalBANP 
TCGA Data PortalBANP 
Broad Tumor PortalBANP
OASIS PortalBANP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBANP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBANP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BANP
DgiDB (Drug Gene Interaction Database)BANP
DoCM (Curated mutations)BANP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BANP (select a term)
intoGenBANP
Cancer3DBANP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611564   
Orphanet
MedgenBANP
Genetic Testing Registry BANP
NextProtQ8N9N5 [Medical]
TSGene54971
GENETestsBANP
Target ValidationBANP
Huge Navigator BANP [HugePedia]
snp3D : Map Gene to Disease54971
BioCentury BCIQBANP
ClinGenBANP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54971
Chemical/Pharm GKB GenePA134933411
Clinical trialBANP
Miscellaneous
canSAR (ICR)BANP (select the gene name)
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBANP
EVEXBANP
GoPubMedBANP
iHOPBANP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:47:47 CEST 2017
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.