Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BARHL1 (BarH like homeobox 1)

Identity

Alias_namesBarH (Drosophila)-like 1
BarH-like homeobox 1
Other alias-
HGNC (Hugo) BARHL1
LocusID (NCBI) 56751
Atlas_Id 52557
Location 9q34.13  [Link to chromosome band 9q34]
Location_base_pair Starts at 135457993 and ends at 135465640 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BARHL1   953
Cards
Entrez_Gene (NCBI)BARHL1  56751  BarH like homeobox 1
Aliases
GeneCards (Weizmann)BARHL1
Ensembl hg19 (Hinxton)ENSG00000125492 [Gene_View]  chr9:135457993-135465640 [Contig_View]  BARHL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000125492 [Gene_View]  chr9:135457993-135465640 [Contig_View]  BARHL1 [Vega]
ICGC DataPortalENSG00000125492
TCGA cBioPortalBARHL1
AceView (NCBI)BARHL1
Genatlas (Paris)BARHL1
WikiGenes56751
SOURCE (Princeton)BARHL1
Genetics Home Reference (NIH)BARHL1
Genomic and cartography
GoldenPath hg19 (UCSC)BARHL1  -     chr9:135457993-135465640 +  9q34.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BARHL1  -     9q34.13   [Description]    (hg38-Dec_2013)
EnsemblBARHL1 - 9q34.13 [CytoView hg19]  BARHL1 - 9q34.13 [CytoView hg38]
Mapping of homologs : NCBIBARHL1 [Mapview hg19]  BARHL1 [Mapview hg38]
OMIM605211   
Gene and transcription
Genbank (Entrez)AF321618 AF325688 AK054797 BC136956 BC136969
RefSeq transcript (Entrez)NM_020064
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929367
Consensus coding sequences : CCDS (NCBI)BARHL1
Cluster EST : UnigeneHs.283809 [ NCBI ]
CGAP (NCI)Hs.283809
Alternative Splicing GalleryENSG00000125492
Gene ExpressionBARHL1 [ NCBI-GEO ]   BARHL1 [ EBI - ARRAY_EXPRESS ]   BARHL1 [ SEEK ]   BARHL1 [ MEM ]
Gene Expression Viewer (FireBrowse)BARHL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56751
GTEX Portal (Tissue expression)BARHL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZE3
Splice isoforms : SwissVarQ9BZE3
PhosPhoSitePlusQ9BZE3
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_CS    Homeobox_dom    Homeobox_metazoa    Homeodomain-like   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)BARHL1
DMDM Disease mutations56751
Blocks (Seattle)BARHL1
SuperfamilyQ9BZE3
Human Protein AtlasENSG00000125492
Peptide AtlasQ9BZE3
HPRD05554
IPIIPI00024060   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZE3
IntAct (EBI)Q9BZE3
FunCoupENSG00000125492
BioGRIDBARHL1
STRING (EMBL)BARHL1
ZODIACBARHL1
Ontologies - Pathways
QuickGOQ9BZE3
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  neuron migration  nucleus  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  sensory perception of sound  midbrain development  negative regulation of neuron apoptotic process  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  neuron migration  nucleus  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  sensory perception of sound  midbrain development  negative regulation of neuron apoptotic process  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkBARHL1
Atlas of Cancer Signalling NetworkBARHL1
Wikipedia pathwaysBARHL1
Orthology - Evolution
OrthoDB56751
GeneTree (enSembl)ENSG00000125492
Phylogenetic Trees/Animal Genes : TreeFamBARHL1
HOVERGENQ9BZE3
HOGENOMQ9BZE3
Homologs : HomoloGeneBARHL1
Homology/Alignments : Family Browser (UCSC)BARHL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBARHL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BARHL1
dbVarBARHL1
ClinVarBARHL1
1000_GenomesBARHL1 
Exome Variant ServerBARHL1
ExAC (Exome Aggregation Consortium)BARHL1 (select the gene name)
Genetic variants : HAPMAP56751
Genomic Variants (DGV)BARHL1 [DGVbeta]
DECIPHER (Syndromes)9:135457993-135465640  ENSG00000125492
CONAN: Copy Number AnalysisBARHL1 
Mutations
ICGC Data PortalBARHL1 
TCGA Data PortalBARHL1 
Broad Tumor PortalBARHL1
OASIS PortalBARHL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBARHL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBARHL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BARHL1
DgiDB (Drug Gene Interaction Database)BARHL1
DoCM (Curated mutations)BARHL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BARHL1 (select a term)
intoGenBARHL1
Cancer3DBARHL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605211   
Orphanet
MedgenBARHL1
Genetic Testing Registry BARHL1
NextProtQ9BZE3 [Medical]
TSGene56751
GENETestsBARHL1
Huge Navigator BARHL1 [HugePedia]
snp3D : Map Gene to Disease56751
BioCentury BCIQBARHL1
ClinGenBARHL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56751
Chemical/Pharm GKB GenePA25257
Clinical trialBARHL1
Miscellaneous
canSAR (ICR)BARHL1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBARHL1
EVEXBARHL1
GoPubMedBARHL1
iHOPBARHL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:53:44 CEST 2017

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