Atlas of Genetics and Cytogenetics in Oncology and Haematology

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BARHL1 (BarH-like homeobox 1)

Identity

Other names-
HGNC (Hugo) BARHL1
LocusID (NCBI) 56751
Location 9q34.13
Location_base_pair Starts at 135457993 and ends at 135465640 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)BARHL1   953
Entrez_Gene (NCBI)BARHL1  56751  BarH-like homeobox 1
Cards
GeneCards (Weizmann)BARHL1
Ensembl (Hinxton)ENSG00000125492 [Gene_View]  chr9:135457993-135465640 [Contig_View]  BARHL1 [Vega]
AceView (NCBI)BARHL1
Genatlas (Paris)BARHL1
SOURCE (Stanford)NM_020064
Genomic and cartography
GoldenPath (UCSC)BARHL1  -  9q34.13   chr9:135457993-135465640 +  9q34.13   [Description]    (hg19-Feb_2009)
EnsemblBARHL1 - 9q34.13 [CytoView]
Mapping of homologs : NCBIBARHL1 [Mapview]
OMIM605211   
Gene and transcription
Genbank (Entrez)AF321618 AF325688 AK054797 BC136956 BC136969
RefSeq transcript (SRS)NM_020064
RefSeq transcript (Entrez)NM_020064
RefSeq genomic (SRS)AC_000141 NC_000009 NC_018920 NT_035014 NW_001839241 NW_004078059
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NT_035014 NW_001839241 NW_004078059
Consensus coding sequences : CCDS (NCBI)BARHL1
Cluster EST : UnigeneHs.283809 [ SRS ] Hs.283809 [ NCBI ]
CGAP (NCI)Hs.283809
Alternative Splicing : Fast-db (Paris)GSHG0030533
Alternative Splicing GalleryENSG00000125492
Gene ExpressionBARHL1 [ NCBI-GEO ]   BARHL1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZE3 (SRS) Q9BZE3 (Uniprot)
NextProtQ9BZE3
With graphics : InterProQ9BZE3
Splice isoforms : SwissVarQ9BZE3(Swissvar)
Domaine pattern : Prosite (SRS)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (SRS)Homeobox_CS    Homeobox_metazoa    Homeodomain    Homeodomain-like   
Domains : Interpro (EBI)Homeobox_CS    Homeobox_metazoa    Homeodomain    Homeodomain-like   
Related proteins : CluSTrQ9BZE3
Domain families : Pfam (SRS)Homeobox (PF00046)   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
DMDM56751
Blocks (Seattle)Q9BZE3
Human Protein AtlasENSG00000125492
HPRD05554
IPIIPI00024060   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZE3
IntAct (EBI)Q9BZE3
FunCoupENSG00000125492
REACTOMEBARHL1
Protein Interaction Database56751
BioGRIDBARHL1
InParanoidQ9BZE3
Interologous Interaction database Q9BZE3
IntegromeDBBARHL1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)BARHL1
SNP (GeneSNP Utah)BARHL1
SNP : HGBaseBARHL1
Genetic variants : HAPMAPBARHL1
Somatic Mutations in Cancer : COSMICBARHL1 
CONAN: Copy Number AnalysisBARHL1 
Mutations and Diseases : HGMDBARHL1
OMIM605211   
GENETests605211   
Disease Genetic AssociationBARHL1
Huge Navigator BARHL1 [HugePedia]  BARHL1 [HugeCancerGEM]
Genomic VariantsBARHL1  BARHL1 [DGVbeta]
snp3D : Map Gene to Disease56751
General knowledge
Homologs : HomoloGeneBARHL1
Homology/Alignments : Family Browser (UCSC)BARHL1
Phylogenetic Trees/Animal Genes : TreeFamBARHL1
Chemical/Protein Interactions : CTD56751
Chemical/Pharm GKB GenePA25257
Clinical trialBARHL1
Cancer Resource (Charite)ENSG00000125492
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription  neuron migration  nucleus  sensory perception of sound  midbrain development  negative regulation of neuron apoptotic process  sequence-specific DNA binding  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription  neuron migration  nucleus  sensory perception of sound  midbrain development  negative regulation of neuron apoptotic process  sequence-specific DNA binding  
Other databases
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
PubGeneBARHL1
iHOPBARHL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:21:34 CEST 2013
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