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BARHL2 (BarH-like homeobox 2)

Identity

Alias_namesBarH (Drosophila)-like 2
BarH-like homeobox 2
Other alias-
HGNC (Hugo) BARHL2
LocusID (NCBI) 343472
Atlas_Id 60707
Location 1p22.2  [Link to chromosome band 1p22]
Location_base_pair Starts at 91177579 and ends at 91182794 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BARHL2   954
Cards
Entrez_Gene (NCBI)BARHL2  343472  BarH-like homeobox 2
Aliases
GeneCards (Weizmann)BARHL2
Ensembl hg19 (Hinxton) [Gene_View]  chr1:91177579-91182794 [Contig_View]  BARHL2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:91177579-91182794 [Contig_View]  BARHL2 [Vega]
TCGA cBioPortalBARHL2
AceView (NCBI)BARHL2
Genatlas (Paris)BARHL2
WikiGenes343472
SOURCE (Princeton)BARHL2
Genetics Home Reference (NIH)BARHL2
Genomic and cartography
GoldenPath hg19 (UCSC)BARHL2  -     chr1:91177579-91182794 -  1p22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BARHL2  -     1p22.2   [Description]    (hg38-Dec_2013)
EnsemblBARHL2 - 1p22.2 [CytoView hg19]  BARHL2 - 1p22.2 [CytoView hg38]
Mapping of homologs : NCBIBARHL2 [Mapview hg19]  BARHL2 [Mapview hg38]
OMIM605212   
Gene and transcription
Genbank (Entrez)AY338397 BC126439 BC126441
RefSeq transcript (Entrez)NM_020063
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)BARHL2
Cluster EST : UnigeneHs.451956 [ NCBI ]
CGAP (NCI)Hs.451956
Gene ExpressionBARHL2 [ NCBI-GEO ]   BARHL2 [ EBI - ARRAY_EXPRESS ]   BARHL2 [ SEEK ]   BARHL2 [ MEM ]
Gene Expression Viewer (FireBrowse)BARHL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)343472
GTEX Portal (Tissue expression)BARHL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY43   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY43  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY43
Splice isoforms : SwissVarQ9NY43
PhosPhoSitePlusQ9NY43
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_CS    Homeobox_dom    Homeobox_metazoa    Homeodomain-like   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)BARHL2
DMDM Disease mutations343472
Blocks (Seattle)BARHL2
SuperfamilyQ9NY43
Peptide AtlasQ9NY43
HPRD05555
IPIIPI00059055   
Protein Interaction databases
DIP (DOE-UCLA)Q9NY43
IntAct (EBI)Q9NY43
BioGRIDBARHL2
STRING (EMBL)BARHL2
ZODIACBARHL2
Ontologies - Pathways
QuickGOQ9NY43
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription  cell fate determination  neuron migration  protein binding  nucleoplasm  cytoplasm  transcription from RNA polymerase II promoter  neuron differentiation  regulation of axon extension  sequence-specific DNA binding  positive regulation of translation  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription  cell fate determination  neuron migration  protein binding  nucleoplasm  cytoplasm  transcription from RNA polymerase II promoter  neuron differentiation  regulation of axon extension  sequence-specific DNA binding  positive regulation of translation  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkBARHL2
Atlas of Cancer Signalling NetworkBARHL2
Wikipedia pathwaysBARHL2
Orthology - Evolution
OrthoDB343472
Phylogenetic Trees/Animal Genes : TreeFamBARHL2
HOVERGENQ9NY43
HOGENOMQ9NY43
Homologs : HomoloGeneBARHL2
Homology/Alignments : Family Browser (UCSC)BARHL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBARHL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BARHL2
dbVarBARHL2
ClinVarBARHL2
1000_GenomesBARHL2 
Exome Variant ServerBARHL2
ExAC (Exome Aggregation Consortium)BARHL2 (select the gene name)
Genetic variants : HAPMAP343472
Genomic Variants (DGV)BARHL2 [DGVbeta]
DECIPHER (Syndromes)1:91177579-91182794  
CONAN: Copy Number AnalysisBARHL2 
Mutations
ICGC Data PortalBARHL2 
TCGA Data PortalBARHL2 
Broad Tumor PortalBARHL2
OASIS PortalBARHL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBARHL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBARHL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BARHL2
DgiDB (Drug Gene Interaction Database)BARHL2
DoCM (Curated mutations)BARHL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BARHL2 (select a term)
intoGenBARHL2
Cancer3DBARHL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605212   
Orphanet
MedgenBARHL2
Genetic Testing Registry BARHL2
NextProtQ9NY43 [Medical]
TSGene343472
GENETestsBARHL2
Huge Navigator BARHL2 [HugePedia]
snp3D : Map Gene to Disease343472
BioCentury BCIQBARHL2
ClinGenBARHL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD343472
Chemical/Pharm GKB GenePA25258
Clinical trialBARHL2
Miscellaneous
canSAR (ICR)BARHL2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBARHL2
EVEXBARHL2
GoPubMedBARHL2
iHOPBARHL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:55:39 CET 2017

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