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BARX1 (BARX homeobox 1)

Identity

Alias (NCBI)-
HGNC (Hugo) BARX1
HGNC Previous nameBarH-like homeobox 1
LocusID (NCBI) 56033
Atlas_Id 57980
Location 9q22.32  [Link to chromosome band 9q22]
Location_base_pair Starts at 93951627 and ends at 93955355 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)BARX1   955
Cards
Entrez_Gene (NCBI)BARX1  56033  BARX homeobox 1
Aliases
GeneCards (Weizmann)BARX1
Ensembl hg19 (Hinxton)ENSG00000131668 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131668 [Gene_View]  ENSG00000131668 [Sequence]  chr9:93951627-93955355 [Contig_View]  BARX1 [Vega]
ICGC DataPortalENSG00000131668
TCGA cBioPortalBARX1
AceView (NCBI)BARX1
Genatlas (Paris)BARX1
WikiGenes56033
SOURCE (Princeton)BARX1
Genetics Home Reference (NIH)BARX1
Genomic and cartography
GoldenPath hg38 (UCSC)BARX1  -     chr9:93951627-93955355 -  9q22.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BARX1  -     9q22.32   [Description]    (hg19-Feb_2009)
GoldenPathBARX1 - 9q22.32 [CytoView hg19]  BARX1 - 9q22.32 [CytoView hg38]
ImmunoBaseENSG00000131668
genome Data Viewer NCBIBARX1 [Mapview hg19]  
OMIM603260   
Gene and transcription
Genbank (Entrez)AF213356 BC009458 BC064363
RefSeq transcript (Entrez)NM_021570
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BARX1
Alternative Splicing GalleryENSG00000131668
Gene ExpressionBARX1 [ NCBI-GEO ]   BARX1 [ EBI - ARRAY_EXPRESS ]   BARX1 [ SEEK ]   BARX1 [ MEM ]
Gene Expression Viewer (FireBrowse)BARX1 [ Firebrowse - Broad ]
GenevisibleExpression of BARX1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56033
GTEX Portal (Tissue expression)BARX1
Human Protein AtlasENSG00000131668-BARX1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBU1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBU1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBU1
Splice isoforms : SwissVarQ9HBU1
PhosPhoSitePlusQ9HBU1
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like_sf    Homeobox_CS    Homeobox_dom    Homeobox_metazoa    HTH_motif   
Domain families : Pfam (Sanger)Homeodomain (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)BARX1
DMDM Disease mutations56033
Blocks (Seattle)BARX1
PDB (RSDB)2DMT   
PDB Europe2DMT   
PDB (PDBSum)2DMT   
PDB (IMB)2DMT   
Structural Biology KnowledgeBase2DMT   
SCOP (Structural Classification of Proteins)2DMT   
CATH (Classification of proteins structures)2DMT   
SuperfamilyQ9HBU1
Human Protein Atlas [tissue]ENSG00000131668-BARX1 [tissue]
Peptide AtlasQ9HBU1
IPIIPI00871182   IPI00879135   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBU1
IntAct (EBI)Q9HBU1
FunCoupENSG00000131668
BioGRIDBARX1
STRING (EMBL)BARX1
ZODIACBARX1
Ontologies - Pathways
QuickGOQ9HBU1
Ontology : AmiGOnuclear chromatin  RNA polymerase II regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  DNA-binding transcription factor activity  nucleus  regulation of transcription by RNA polymerase II  cell-cell signaling  anterior/posterior pattern specification  negative regulation of Wnt signaling pathway  epithelial cell differentiation  positive regulation of transcription by RNA polymerase II  spleen development  
Ontology : EGO-EBInuclear chromatin  RNA polymerase II regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  DNA-binding transcription factor activity  nucleus  regulation of transcription by RNA polymerase II  cell-cell signaling  anterior/posterior pattern specification  negative regulation of Wnt signaling pathway  epithelial cell differentiation  positive regulation of transcription by RNA polymerase II  spleen development  
NDEx NetworkBARX1
Atlas of Cancer Signalling NetworkBARX1
Wikipedia pathwaysBARX1
Orthology - Evolution
OrthoDB56033
GeneTree (enSembl)ENSG00000131668
Phylogenetic Trees/Animal Genes : TreeFamBARX1
HOGENOMQ9HBU1
Homologs : HomoloGeneBARX1
Homology/Alignments : Family Browser (UCSC)BARX1
Gene fusions - Rearrangements
Fusion : QuiverBARX1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBARX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BARX1
dbVarBARX1
ClinVarBARX1
MonarchBARX1
1000_GenomesBARX1 
Exome Variant ServerBARX1
GNOMAD BrowserENSG00000131668
Varsome BrowserBARX1
Genetic variants : HAPMAP56033
Genomic Variants (DGV)BARX1 [DGVbeta]
DECIPHERBARX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBARX1 
Mutations
ICGC Data PortalBARX1 
TCGA Data PortalBARX1 
Broad Tumor PortalBARX1
OASIS PortalBARX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBARX1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBARX1
Mutations and Diseases : HGMDBARX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BARX1
DgiDB (Drug Gene Interaction Database)BARX1
DoCM (Curated mutations)BARX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BARX1 (select a term)
intoGenBARX1
Cancer3DBARX1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603260   
Orphanet
DisGeNETBARX1
MedgenBARX1
Genetic Testing Registry BARX1
NextProtQ9HBU1 [Medical]
TSGene56033
GENETestsBARX1
Target ValidationBARX1
Huge Navigator BARX1 [HugePedia]
snp3D : Map Gene to Disease56033
BioCentury BCIQBARX1
ClinGenBARX1
Clinical trials, drugs, therapy
Protein Interactions : CTD56033
Pharm GKB GenePA25259
Clinical trialBARX1
Miscellaneous
canSAR (ICR)BARX1 (select the gene name)
HarmonizomeBARX1
DataMed IndexBARX1
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBARX1
EVEXBARX1
GoPubMedBARX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:02:59 CEST 2020

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