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BARX1 (BARX homeobox 1)

Identity

Alias_namesBarH-like homeobox 1
Other alias-
HGNC (Hugo) BARX1
LocusID (NCBI) 56033
Atlas_Id 60708
Location 9q22.32  [Link to chromosome band 9q22]
Location_base_pair Starts at 93951627 and ends at 93955326 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BARX1   955
Cards
Entrez_Gene (NCBI)BARX1  56033  BARX homeobox 1
Aliases
GeneCards (Weizmann)BARX1
Ensembl hg19 (Hinxton)ENSG00000131668 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131668 [Gene_View]  chr9:93951627-93955326 [Contig_View]  BARX1 [Vega]
ICGC DataPortalENSG00000131668
TCGA cBioPortalBARX1
AceView (NCBI)BARX1
Genatlas (Paris)BARX1
WikiGenes56033
SOURCE (Princeton)BARX1
Genetics Home Reference (NIH)BARX1
Genomic and cartography
GoldenPath hg38 (UCSC)BARX1  -     chr9:93951627-93955326 -  9q22.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BARX1  -     9q22.32   [Description]    (hg19-Feb_2009)
EnsemblBARX1 - 9q22.32 [CytoView hg19]  BARX1 - 9q22.32 [CytoView hg38]
Mapping of homologs : NCBIBARX1 [Mapview hg19]  BARX1 [Mapview hg38]
OMIM603260   
Gene and transcription
Genbank (Entrez)AF213356 BC009458 BC064363 JF432442
RefSeq transcript (Entrez)NM_021570
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BARX1
Cluster EST : UnigeneHs.164960 [ NCBI ]
CGAP (NCI)Hs.164960
Alternative Splicing GalleryENSG00000131668
Gene ExpressionBARX1 [ NCBI-GEO ]   BARX1 [ EBI - ARRAY_EXPRESS ]   BARX1 [ SEEK ]   BARX1 [ MEM ]
Gene Expression Viewer (FireBrowse)BARX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56033
GTEX Portal (Tissue expression)BARX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBU1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBU1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBU1
Splice isoforms : SwissVarQ9HBU1
PhosPhoSitePlusQ9HBU1
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    Homeobox_metazoa    HTH_motif   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)BARX1
DMDM Disease mutations56033
Blocks (Seattle)BARX1
PDB (SRS)2DMT   
PDB (PDBSum)2DMT   
PDB (IMB)2DMT   
PDB (RSDB)2DMT   
Structural Biology KnowledgeBase2DMT   
SCOP (Structural Classification of Proteins)2DMT   
CATH (Classification of proteins structures)2DMT   
SuperfamilyQ9HBU1
Human Protein AtlasENSG00000131668
Peptide AtlasQ9HBU1
HPRD16017
IPIIPI00871182   IPI00879135   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBU1
IntAct (EBI)Q9HBU1
FunCoupENSG00000131668
BioGRIDBARX1
STRING (EMBL)BARX1
ZODIACBARX1
Ontologies - Pathways
QuickGOQ9HBU1
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  transcription factor activity, sequence-specific DNA binding  nucleus  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  cell-cell signaling  nervous system development  tissue development  anterior/posterior pattern specification  negative regulation of Wnt signaling pathway  epithelial cell differentiation  positive regulation of transcription from RNA polymerase II promoter  animal organ development  spleen development  digestive system development  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  transcription factor activity, sequence-specific DNA binding  nucleus  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  cell-cell signaling  nervous system development  tissue development  anterior/posterior pattern specification  negative regulation of Wnt signaling pathway  epithelial cell differentiation  positive regulation of transcription from RNA polymerase II promoter  animal organ development  spleen development  digestive system development  
NDEx NetworkBARX1
Atlas of Cancer Signalling NetworkBARX1
Wikipedia pathwaysBARX1
Orthology - Evolution
OrthoDB56033
GeneTree (enSembl)ENSG00000131668
Phylogenetic Trees/Animal Genes : TreeFamBARX1
HOVERGENQ9HBU1
HOGENOMQ9HBU1
Homologs : HomoloGeneBARX1
Homology/Alignments : Family Browser (UCSC)BARX1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBARX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BARX1
dbVarBARX1
ClinVarBARX1
1000_GenomesBARX1 
Exome Variant ServerBARX1
ExAC (Exome Aggregation Consortium)BARX1 (select the gene name)
Genetic variants : HAPMAP56033
Genomic Variants (DGV)BARX1 [DGVbeta]
DECIPHERBARX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBARX1 
Mutations
ICGC Data PortalBARX1 
TCGA Data PortalBARX1 
Broad Tumor PortalBARX1
OASIS PortalBARX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBARX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBARX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BARX1
DgiDB (Drug Gene Interaction Database)BARX1
DoCM (Curated mutations)BARX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BARX1 (select a term)
intoGenBARX1
Cancer3DBARX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603260   
Orphanet
MedgenBARX1
Genetic Testing Registry BARX1
NextProtQ9HBU1 [Medical]
TSGene56033
GENETestsBARX1
Target ValidationBARX1
Huge Navigator BARX1 [HugePedia]
snp3D : Map Gene to Disease56033
BioCentury BCIQBARX1
ClinGenBARX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56033
Chemical/Pharm GKB GenePA25259
Clinical trialBARX1
Miscellaneous
canSAR (ICR)BARX1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBARX1
EVEXBARX1
GoPubMedBARX1
iHOPBARX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:29 CEST 2017

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