| Nomenclature |
|---|
| HGNC (Hugo) | BARX2 956 |
| Cards |
|---|
| Entrez_Gene (NCBI) | BARX2 BARX homeobox 2 |
| Aliases | |
| GeneCards (Weizmann) | BARX2 |
| Ensembl hg19 (Hinxton) | ENSG00000043039 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000043039 [Gene_View] ENSG00000043039 [Sequence] chr11:129375848-129452279 [Contig_View] BARX2 [Vega] |
| ICGC DataPortal | ENSG00000043039 |
| TCGA cBioPortal | BARX2 |
| AceView (NCBI) | BARX2 |
| Genatlas (Paris) | BARX2 |
| SOURCE (Princeton) | BARX2 |
| Genetics Home Reference (NIH) | BARX2 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | BARX2 - chr11:129375848-129452279 + 11q24.3 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | BARX2 - 11q24.3 [Description] (hg19-Feb_2009) |
| GoldenPath | BARX2 - 11q24.3 [CytoView hg19] BARX2 - 11q24.3 [CytoView hg38] |
| ImmunoBase | ENSG00000043039 |
| genome Data Viewer NCBI | BARX2 [Mapview hg19] |
| OMIM | 604823 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AF031924 AJ243512 AK022187 BC069378 BC111432 |
| RefSeq transcript (Entrez) | NM_003658 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | BARX2 |
| Alternative Splicing Gallery | ENSG00000043039 |
| Gene Expression | BARX2 [ NCBI-GEO ] BARX2 [ EBI - ARRAY_EXPRESS ]
BARX2 [ SEEK ] BARX2 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | BARX2 [ Firebrowse - Broad ] |
| Genevisible | Expression of BARX2 in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 8538 |
| GTEX Portal (Tissue expression) | BARX2 |
| Human Protein Atlas | ENSG00000043039-BARX2 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q9UMQ3 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q9UMQ3 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q9UMQ3 |
| Splice isoforms : SwissVar | Q9UMQ3 |
| PhosPhoSitePlus | Q9UMQ3 |
| Domaine pattern : Prosite (Expaxy) | HOMEOBOX_1 (PS00027) HOMEOBOX_2 (PS50071) |
| Domains : Interpro (EBI) | Homeobox-like_sf Homeobox_CS Homeobox_dom Homeobox_metazoa HTH_motif |
| Domain families : Pfam (Sanger) | Homeodomain (PF00046) |
| Domain families : Pfam (NCBI) | pfam00046 |
| Domain families : Smart (EMBL) | HOX (SM00389) |
| Conserved Domain (NCBI) | BARX2 |
| Blocks (Seattle) | BARX2 |
| Superfamily | Q9UMQ3 |
| Human Protein Atlas [tissue] | ENSG00000043039-BARX2 [tissue] |
| Peptide Atlas | Q9UMQ3 |
| HPRD | 16074 |
| IPI | IPI00216572 IPI01025092 IPI01024732 IPI00976828 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q9UMQ3 |
| IntAct (EBI) | Q9UMQ3 |
| BioGRID | BARX2 |
| STRING (EMBL) | BARX2 |
| ZODIAC | BARX2 |
| Ontologies - Pathways |
|---|
| QuickGO | Q9UMQ3 |
| Ontology : AmiGO | negative regulation of transcription by RNA polymerase II nuclear chromatin RNA polymerase II regulatory region sequence-specific DNA binding RNA polymerase II regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific cartilage condensation DNA binding chromatin binding nucleus nucleoplasm transcription factor complex cytosol regulation of transcription by RNA polymerase II myotube differentiation positive regulation of transcription by RNA polymerase II |
| Ontology : EGO-EBI | negative regulation of transcription by RNA polymerase II nuclear chromatin RNA polymerase II regulatory region sequence-specific DNA binding RNA polymerase II regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific cartilage condensation DNA binding chromatin binding nucleus nucleoplasm transcription factor complex cytosol regulation of transcription by RNA polymerase II myotube differentiation positive regulation of transcription by RNA polymerase II |
| NDEx Network | BARX2 |
| Atlas of Cancer Signalling Network | BARX2 |
| Wikipedia pathways | BARX2 |
| Orthology - Evolution |
|---|
| OrthoDB | 8538 |
| GeneTree (enSembl) | ENSG00000043039 |
| Phylogenetic Trees/Animal Genes : TreeFam | BARX2 |
| HOGENOM | Q9UMQ3 |
| Homologs : HomoloGene | BARX2 |
| Homology/Alignments : Family Browser (UCSC) | BARX2 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Mitelman | ST14/BARX2 [11q24.3/11q24.3] |
| Fusion Portal | ST14 11q24.3 BARX2 11q24.3 BRCA |
| Fusion : Quiver | BARX2 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | BARX2 [hg38] |
| dbVar | BARX2 |
| ClinVar | BARX2 |
| Monarch | BARX2 |
| 1000_Genomes | BARX2 |
| Exome Variant Server | BARX2 |
| GNOMAD Browser | ENSG00000043039 |
| Varsome Browser | BARX2 |
| Genomic Variants (DGV) | BARX2 [DGVbeta] |
| DECIPHER | BARX2 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | BARX2 |
| Mutations |
|---|
| ICGC Data Portal | BARX2 |
| TCGA Data Portal | BARX2 |
| Broad Tumor Portal | BARX2 |
| OASIS Portal | BARX2 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | BARX2 [overview] [genome browser] [tissue] [distribution] |
| Somatic Mutations in Cancer : COSMIC3D | BARX2 |
| Mutations and Diseases : HGMD | BARX2 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search BARX2 |
| DgiDB (Drug Gene Interaction Database) | BARX2 |
| DoCM (Curated mutations) | BARX2 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | BARX2 (select a term) |
| intoGen | BARX2 |
| Cancer3D | BARX2(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 604823 |
| Orphanet | |
| DisGeNET | BARX2 |
| Medgen | BARX2 |
| Genetic Testing Registry | BARX2
|
| NextProt | Q9UMQ3 [Medical] |
| GENETests | BARX2 |
| Target Validation | BARX2 |
| Huge Navigator |
BARX2 [HugePedia] |
| ClinGen | BARX2 |
| Clinical trials, drugs, therapy |
|---|
| MyCancerGenome | BARX2 |
| Protein Interactions : CTD | |
| Pharm GKB Gene | PA25260 |
| Pharos | Q9UMQ3 |
| Clinical trial | BARX2 |
| Miscellaneous |
|---|
| canSAR (ICR) | BARX2 (select the gene name) |
| Harmonizome | BARX2 |
| DataMed Index | BARX2 |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 17 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| EVEX | BARX2 |
