| Nomenclature |
|---|
| HGNC (Hugo) | BARX2 956 |
| Cards |
|---|
| Entrez_Gene (NCBI) | BARX2 8538 BARX homeobox 2 |
| Aliases | |
| GeneCards (Weizmann) | BARX2 |
| Ensembl hg19 (Hinxton) | ENSG00000043039 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000043039 [Gene_View] ENSG00000043039 [Sequence] chr11:129375986-129452279 [Contig_View] BARX2 [Vega] |
| ICGC DataPortal | ENSG00000043039 |
| TCGA cBioPortal | BARX2 |
| AceView (NCBI) | BARX2 |
| Genatlas (Paris) | BARX2 |
| WikiGenes | 8538 |
| SOURCE (Princeton) | BARX2 |
| Genetics Home Reference (NIH) | BARX2 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | BARX2 - chr11:129375986-129452279 + 11q24.3 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | BARX2 - 11q24.3 [Description] (hg19-Feb_2009) |
BARX2 - 11q24.3 [CytoView hg19] BARX2 - 11q24.3 [CytoView hg38] |
| Mapping of homologs : NCBI | BARX2 [Mapview hg19] BARX2 [Mapview hg38] |
| OMIM | 604823 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AF031924 AJ243512 AK022187 BC069378 BC111432 |
| RefSeq transcript (Entrez) | NM_003658 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | BARX2 |
| Cluster EST : Unigene | Hs.591944 [ NCBI ] |
| CGAP (NCI) | Hs.591944 |
| Alternative Splicing Gallery | ENSG00000043039 |
| Gene Expression | BARX2 [ NCBI-GEO ] BARX2 [ EBI - ARRAY_EXPRESS ]
BARX2 [ SEEK ] BARX2 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | BARX2 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 8538 |
| GTEX Portal (Tissue expression) | BARX2 |
| Human Protein Atlas | ENSG00000043039-BARX2 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q9UMQ3 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q9UMQ3 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q9UMQ3 |
| Splice isoforms : SwissVar | Q9UMQ3 |
| PhosPhoSitePlus | Q9UMQ3 |
| Domaine pattern : Prosite (Expaxy) | HOMEOBOX_1 (PS00027) HOMEOBOX_2 (PS50071) |
| Domains : Interpro (EBI) | Homeobox-like_sf Homeobox_CS Homeobox_dom Homeobox_metazoa HTH_motif |
| Domain families : Pfam (Sanger) | Homeobox (PF00046) |
| Domain families : Pfam (NCBI) | pfam00046 |
| Domain families : Smart (EMBL) | HOX (SM00389) |
| Conserved Domain (NCBI) | BARX2 |
| DMDM Disease mutations | 8538 |
| Blocks (Seattle) | BARX2 |
| Superfamily | Q9UMQ3 |
| Human Protein Atlas [tissue] | ENSG00000043039-BARX2 [tissue] |
| Peptide Atlas | Q9UMQ3 |
| HPRD | 16074 |
| IPI | IPI00216572 IPI01025092 IPI01024732 IPI00976828 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q9UMQ3 |
| IntAct (EBI) | Q9UMQ3 |
| FunCoup | ENSG00000043039 |
| BioGRID | BARX2 |
| STRING (EMBL) | BARX2 |
| ZODIAC | BARX2 |
| Ontologies - Pathways |
|---|
| QuickGO | Q9UMQ3 |
| Ontology : AmiGO | negative regulation of transcription by RNA polymerase II RNA polymerase II regulatory region sequence-specific DNA binding RNA polymerase II regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific cartilage condensation DNA binding chromatin binding nucleus nucleoplasm transcription factor complex cytosol regulation of transcription by RNA polymerase II tissue development myotube differentiation positive regulation of transcription by RNA polymerase II animal organ development |
| Ontology : EGO-EBI | negative regulation of transcription by RNA polymerase II RNA polymerase II regulatory region sequence-specific DNA binding RNA polymerase II regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific cartilage condensation DNA binding chromatin binding nucleus nucleoplasm transcription factor complex cytosol regulation of transcription by RNA polymerase II tissue development myotube differentiation positive regulation of transcription by RNA polymerase II animal organ development |
| NDEx Network | BARX2 |
| Atlas of Cancer Signalling Network | BARX2 |
| Wikipedia pathways | BARX2 |
| Orthology - Evolution |
|---|
| OrthoDB | 8538 |
| GeneTree (enSembl) | ENSG00000043039 |
| Phylogenetic Trees/Animal Genes : TreeFam | BARX2 |
| HOGENOM | Q9UMQ3 |
| Homologs : HomoloGene | BARX2 |
| Homology/Alignments : Family Browser (UCSC) | BARX2 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Mitelman | ST14/BARX2 [11q24.3/11q24.3] [t(11;11)(q24;q24)] |
| Fusion Portal | ST14 11q24.3 BARX2 11q24.3 BRCA |
| Fusion : Quiver | BARX2 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | BARX2 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | BARX2 |
| dbVar | BARX2 |
| ClinVar | BARX2 |
| 1000_Genomes | BARX2 |
| Exome Variant Server | BARX2 |
| ExAC (Exome Aggregation Consortium) | ENSG00000043039 |
| GNOMAD Browser | ENSG00000043039 |
| Varsome Browser | BARX2 |
| Genetic variants : HAPMAP | 8538 |
| Genomic Variants (DGV) | BARX2 [DGVbeta] |
| DECIPHER | BARX2 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | BARX2 |
| Mutations |
|---|
| ICGC Data Portal | BARX2 |
| TCGA Data Portal | BARX2 |
| Broad Tumor Portal | BARX2 |
| OASIS Portal | BARX2 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | BARX2 [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | BARX2 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search BARX2 |
| DgiDB (Drug Gene Interaction Database) | BARX2 |
| DoCM (Curated mutations) | BARX2 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | BARX2 (select a term) |
| intoGen | BARX2 |
| Cancer3D | BARX2(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 604823 |
| Orphanet | |
| DisGeNET | BARX2 |
| Medgen | BARX2 |
| Genetic Testing Registry | BARX2
|
| NextProt | Q9UMQ3 [Medical] |
| TSGene | 8538 |
| GENETests | BARX2 |
| Target Validation | BARX2 |
| Huge Navigator |
BARX2 [HugePedia] |
| snp3D : Map Gene to Disease | 8538 |
| BioCentury BCIQ | BARX2 |
| ClinGen | BARX2 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 8538 |
| Chemical/Pharm GKB Gene | PA25260 |
| Clinical trial | BARX2 |
| Miscellaneous |
|---|
| canSAR (ICR) | BARX2 (select the gene name) |
| DataMed Index | BARX2 |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 15 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | BARX2 |
| EVEX | BARX2 |
| GoPubMed | BARX2 |
| iHOP | BARX2 |
