Atlas of Genetics and Cytogenetics in Oncology and Haematology

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BARX2 (BARX homeobox 2)

Identity

Alias_namesBarH-like homeobox 2
Other alias-
HGNC (Hugo) BARX2
LocusID (NCBI) 8538
Atlas_Id 46388
Location 11q24.3  [Link to chromosome band 11q24]
Location_base_pair Starts at 129375986 and ends at 129452279 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		ST14 (11q24.3) / BARX2 (11q24.3)ST14 11q24.3 / BARX2 11q24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BARX2   956
Cards
Entrez_Gene (NCBI)BARX2  8538  BARX homeobox 2
Aliases
GeneCards (Weizmann)BARX2
Ensembl hg19 (Hinxton)ENSG00000043039 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000043039 [Gene_View]  chr11:129375986-129452279 [Contig_View]  BARX2 [Vega]
ICGC DataPortalENSG00000043039
TCGA cBioPortalBARX2
AceView (NCBI)BARX2
Genatlas (Paris)BARX2
WikiGenes8538
SOURCE (Princeton)BARX2
Genetics Home Reference (NIH)BARX2
Genomic and cartography
GoldenPath hg38 (UCSC)BARX2  -     chr11:129375986-129452279 +  11q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BARX2  -     11q24.3   [Description]    (hg19-Feb_2009)
EnsemblBARX2 - 11q24.3 [CytoView hg19]  BARX2 - 11q24.3 [CytoView hg38]
Mapping of homologs : NCBIBARX2 [Mapview hg19]  BARX2 [Mapview hg38]
OMIM604823   
Gene and transcription
Genbank (Entrez)AF031924 AJ243512 AK022187 BC069378 BC111432
RefSeq transcript (Entrez)NM_003658
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BARX2
Cluster EST : UnigeneHs.591944 [ NCBI ]
CGAP (NCI)Hs.591944
Alternative Splicing GalleryENSG00000043039
Gene ExpressionBARX2 [ NCBI-GEO ]   BARX2 [ EBI - ARRAY_EXPRESS ]   BARX2 [ SEEK ]   BARX2 [ MEM ]
Gene Expression Viewer (FireBrowse)BARX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8538
GTEX Portal (Tissue expression)BARX2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UMQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UMQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UMQ3
Splice isoforms : SwissVarQ9UMQ3
PhosPhoSitePlusQ9UMQ3
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    Homeobox_metazoa    HTH_motif   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)BARX2
DMDM Disease mutations8538
Blocks (Seattle)BARX2
SuperfamilyQ9UMQ3
Human Protein AtlasENSG00000043039
Peptide AtlasQ9UMQ3
HPRD16074
IPIIPI00216572   IPI01025092   IPI01024732   IPI00976828   
Protein Interaction databases
DIP (DOE-UCLA)Q9UMQ3
IntAct (EBI)Q9UMQ3
FunCoupENSG00000043039
BioGRIDBARX2
STRING (EMBL)BARX2
ZODIACBARX2
Ontologies - Pathways
QuickGOQ9UMQ3
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II regulatory region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  cartilage condensation  DNA binding  chromatin binding  nucleus  nucleoplasm  transcription factor complex  cytosol  transcription from RNA polymerase II promoter  nervous system development  myotube differentiation  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II regulatory region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  cartilage condensation  DNA binding  chromatin binding  nucleus  nucleoplasm  transcription factor complex  cytosol  transcription from RNA polymerase II promoter  nervous system development  myotube differentiation  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkBARX2
Atlas of Cancer Signalling NetworkBARX2
Wikipedia pathwaysBARX2
Orthology - Evolution
OrthoDB8538
GeneTree (enSembl)ENSG00000043039
Phylogenetic Trees/Animal Genes : TreeFamBARX2
HOVERGENQ9UMQ3
HOGENOMQ9UMQ3
Homologs : HomoloGeneBARX2
Homology/Alignments : Family Browser (UCSC)BARX2
Gene fusions - Rearrangements
Fusion : MitelmanST14/BARX2 [11q24.3/11q24.3]  [t(11;11)(q24;q24)]  
Fusion: TCGAST14 11q24.3 BARX2 11q24.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBARX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BARX2
dbVarBARX2
ClinVarBARX2
1000_GenomesBARX2 
Exome Variant ServerBARX2
ExAC (Exome Aggregation Consortium)BARX2 (select the gene name)
Genetic variants : HAPMAP8538
Genomic Variants (DGV)BARX2 [DGVbeta]
DECIPHERBARX2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBARX2 
Mutations
ICGC Data PortalBARX2 
TCGA Data PortalBARX2 
Broad Tumor PortalBARX2
OASIS PortalBARX2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBARX2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBARX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BARX2
DgiDB (Drug Gene Interaction Database)BARX2
DoCM (Curated mutations)BARX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BARX2 (select a term)
intoGenBARX2
Cancer3DBARX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604823   
Orphanet
MedgenBARX2
Genetic Testing Registry BARX2
NextProtQ9UMQ3 [Medical]
TSGene8538
GENETestsBARX2
Target ValidationBARX2
Huge Navigator BARX2 [HugePedia]
snp3D : Map Gene to Disease8538
BioCentury BCIQBARX2
ClinGenBARX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8538
Chemical/Pharm GKB GenePA25260
Clinical trialBARX2
Miscellaneous
canSAR (ICR)BARX2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBARX2
EVEXBARX2
GoPubMedBARX2
iHOPBARX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:25:15 CEST 2017
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