| Nomenclature |
HGNC (Hugo) | BARX2 956 |
| Cards |
Entrez_Gene (NCBI) | BARX2 BARX homeobox 2 |
Aliases | |
GeneCards (Weizmann) | BARX2 |
Ensembl hg19 (Hinxton) | ENSG00000043039 [Gene_View] |
Ensembl hg38 (Hinxton) | ENSG00000043039 [Gene_View]  ENSG00000043039 [Sequence] chr11:129375848-129452279 [Contig_View] BARX2 [Vega] |
ICGC DataPortal | ENSG00000043039 |
TCGA cBioPortal | BARX2 |
AceView (NCBI) | BARX2 |
Genatlas (Paris) | BARX2 |
SOURCE (Princeton) | BARX2 |
Genetics Home Reference (NIH) | BARX2 |
| Genomic and cartography |
GoldenPath hg38 (UCSC) | BARX2 - chr11:129375848-129452279 + 11q24.3 [Description] (hg38-Dec_2013) |
GoldenPath hg19 (UCSC) | BARX2 - 11q24.3 [Description] (hg19-Feb_2009) |
GoldenPath | BARX2 - 11q24.3 [CytoView hg19] BARX2 - 11q24.3 [CytoView hg38] |
ImmunoBase | ENSG00000043039 |
genome Data Viewer NCBI | BARX2 [Mapview hg19] |
OMIM | 604823 |
| Gene and transcription |
Genbank (Entrez) | AF031924 AJ243512 AK022187 BC069378 BC111432 |
RefSeq transcript (Entrez) | NM_003658 |
RefSeq genomic (Entrez) | |
Consensus coding sequences : CCDS (NCBI) | BARX2 |
Alternative Splicing Gallery | ENSG00000043039 |
Gene Expression | BARX2 [ NCBI-GEO ] BARX2 [ EBI - ARRAY_EXPRESS ]
BARX2 [ SEEK ] BARX2 [ MEM ] |
Gene Expression Viewer (FireBrowse) | BARX2 [ Firebrowse - Broad ] |
Genevisible | Expression of BARX2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]   |
BioGPS (Tissue expression) | 8538 |
GTEX Portal (Tissue expression) | BARX2 |
Human Protein Atlas | ENSG00000043039-BARX2 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
UniProt/SwissProt | Q9UMQ3 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
NextProt | Q9UMQ3 [Sequence] [Exons] [Medical] [Publications] |
With graphics : InterPro | Q9UMQ3 |
Splice isoforms : SwissVar | Q9UMQ3 |
PhosPhoSitePlus | Q9UMQ3 |
Domaine pattern : Prosite (Expaxy) | HOMEOBOX_1 (PS00027) HOMEOBOX_2 (PS50071) |
Domains : Interpro (EBI) | Homeobox-like_sf Homeobox_CS Homeobox_dom Homeobox_metazoa HTH_motif |
Domain families : Pfam (Sanger) | Homeodomain (PF00046) |
Domain families : Pfam (NCBI) | pfam00046 |
Domain families : Smart (EMBL) | HOX (SM00389) |
Conserved Domain (NCBI) | BARX2 |
Blocks (Seattle) | BARX2 |
Superfamily | Q9UMQ3 |
Human Protein Atlas [tissue] | ENSG00000043039-BARX2 [tissue] |
Peptide Atlas | Q9UMQ3 |
HPRD | 16074 |
IPI | IPI00216572 IPI01025092 IPI01024732 IPI00976828 |
| Protein Interaction databases |
DIP (DOE-UCLA) | Q9UMQ3 |
IntAct (EBI) | Q9UMQ3 |
BioGRID | BARX2 |
STRING (EMBL) | BARX2 |
ZODIAC | BARX2 |
| Ontologies - Pathways |
QuickGO | Q9UMQ3 |
Ontology : AmiGO | negative regulation of transcription by RNA polymerase II nuclear chromatin RNA polymerase II regulatory region sequence-specific DNA binding RNA polymerase II regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific cartilage condensation DNA binding chromatin binding nucleus nucleoplasm transcription factor complex cytosol regulation of transcription by RNA polymerase II myotube differentiation positive regulation of transcription by RNA polymerase II |
Ontology : EGO-EBI | negative regulation of transcription by RNA polymerase II nuclear chromatin RNA polymerase II regulatory region sequence-specific DNA binding RNA polymerase II regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific cartilage condensation DNA binding chromatin binding nucleus nucleoplasm transcription factor complex cytosol regulation of transcription by RNA polymerase II myotube differentiation positive regulation of transcription by RNA polymerase II |
NDEx Network | BARX2 |
Atlas of Cancer Signalling Network | BARX2 |
Wikipedia pathways | BARX2 |
| Orthology - Evolution |
OrthoDB | 8538 |
GeneTree (enSembl) | ENSG00000043039 |
Phylogenetic Trees/Animal Genes : TreeFam | BARX2 |
HOGENOM | Q9UMQ3 |
Homologs : HomoloGene | BARX2 |
Homology/Alignments : Family Browser (UCSC) | BARX2 |
| Gene fusions - Rearrangements |
Fusion : Mitelman | ST14/BARX2 [11q24.3/11q24.3]   |
Fusion Portal | ST14 11q24.3 BARX2 11q24.3 BRCA |
Fusion : Quiver | BARX2 |
| Polymorphisms : SNP and Copy number variants |
NCBI Variation Viewer | BARX2 [hg38] |
dbVar | BARX2 |
ClinVar | BARX2 |
Monarch | BARX2 |
1000_Genomes | BARX2 |
Exome Variant Server | BARX2 |
GNOMAD Browser | ENSG00000043039 |
Varsome Browser | BARX2 |
Genomic Variants (DGV) | BARX2 [DGVbeta] |
DECIPHER | BARX2 [patients] [syndromes] [variants] [genes] |
CONAN: Copy Number Analysis | BARX2 |
| Mutations |
ICGC Data Portal | BARX2 |
TCGA Data Portal | BARX2 |
Broad Tumor Portal | BARX2 |
OASIS Portal | BARX2 [ Somatic mutations - Copy number] |
Somatic Mutations in Cancer : COSMIC | BARX2 [overview] [genome browser] [tissue] [distribution] |
Somatic Mutations in Cancer : COSMIC3D | BARX2 |
Mutations and Diseases : HGMD | BARX2 |
LOVD (Leiden Open Variation Database) | Whole genome datasets |
LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
BioMuta | search BARX2 |
DgiDB (Drug Gene Interaction Database) | BARX2 |
DoCM (Curated mutations) | BARX2 (select the gene name) |
CIViC (Clinical Interpretations of Variants in Cancer) | BARX2 (select a term) |
intoGen | BARX2 |
Cancer3D | BARX2(select the gene name) |
Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
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OMIM | 604823 |
Orphanet | |
DisGeNET | BARX2 |
Medgen | BARX2 |
Genetic Testing Registry | BARX2
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NextProt | Q9UMQ3 [Medical] |
GENETests | BARX2 |
Target Validation | BARX2 |
Huge Navigator |
BARX2 [HugePedia] |
ClinGen | BARX2 |
| Clinical trials, drugs, therapy |
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MyCancerGenome | BARX2 |
Protein Interactions : CTD | |
Pharm GKB Gene | PA25260 |
Pharos | Q9UMQ3 |
Clinical trial | BARX2 |
| Miscellaneous |
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canSAR (ICR) | BARX2 (select the gene name) |
Harmonizome | BARX2 |
DataMed Index | BARX2 |
| Probes |
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| Litterature |
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PubMed | 17 Pubmed reference(s) in Entrez |
GeneRIFs | Gene References Into Functions (Entrez) |
EVEX | BARX2 |