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BASP1-AS1 (BASP1 antisense RNA 1)

Identity

Alias_symbol (synonym)LOC285696
Other alias-
HGNC (Hugo) BASP1-AS1
LocusID (NCBI) 285696
Atlas_Id 78840
Location 5p15.1  [Link to chromosome band 5p15]
Location_base_pair Starts at 17130028 and ends at 17217047 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)BASP1-AS1   26609
Cards
Entrez_Gene (NCBI)BASP1-AS1  285696  BASP1 antisense RNA 1
Aliases
GeneCards (Weizmann)BASP1-AS1
Ensembl hg19 (Hinxton)ENSG00000215196 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215196 [Gene_View]  chr5:17130028-17217047 [Contig_View]  BASP1-AS1 [Vega]
ICGC DataPortalENSG00000215196
TCGA cBioPortalBASP1-AS1
AceView (NCBI)BASP1-AS1
Genatlas (Paris)BASP1-AS1
WikiGenes285696
SOURCE (Princeton)BASP1-AS1
Genetics Home Reference (NIH)BASP1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)BASP1-AS1  -     chr5:17130028-17217047 -  5p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BASP1-AS1  -     5p15.1   [Description]    (hg19-Feb_2009)
EnsemblBASP1-AS1 - 5p15.1 [CytoView hg19]  BASP1-AS1 - 5p15.1 [CytoView hg38]
Mapping of homologs : NCBIBASP1-AS1 [Mapview hg19]  BASP1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091366 AK125192 BC093861 BC093887
RefSeq transcript (Entrez)NM_173669
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BASP1-AS1
Cluster EST : UnigeneHs.646924 [ NCBI ]
CGAP (NCI)Hs.646924
Alternative Splicing GalleryENSG00000215196
Gene ExpressionBASP1-AS1 [ NCBI-GEO ]   BASP1-AS1 [ EBI - ARRAY_EXPRESS ]   BASP1-AS1 [ SEEK ]   BASP1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)BASP1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)285696
GTEX Portal (Tissue expression)BASP1-AS1
Human Protein AtlasENSG00000215196-BASP1-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BASP1-AS1
DMDM Disease mutations285696
Blocks (Seattle)BASP1-AS1
Human Protein Atlas [tissue]ENSG00000215196-BASP1-AS1 [tissue]
IPIIPI00168191   
Protein Interaction databases
FunCoupENSG00000215196
BioGRIDBASP1-AS1
STRING (EMBL)BASP1-AS1
ZODIACBASP1-AS1
Ontologies - Pathways
Huge Navigator BASP1-AS1 [HugePedia]
snp3D : Map Gene to Disease285696
BioCentury BCIQBASP1-AS1
ClinGenBASP1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285696
Clinical trialBASP1-AS1
Miscellaneous
canSAR (ICR)BASP1-AS1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBASP1-AS1
EVEXBASP1-AS1
GoPubMedBASP1-AS1
iHOPBASP1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:11:47 CET 2018

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