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BASP1 (brain abundant membrane attached signal protein 1)

Identity

Alias_namesbrain abundant
Alias_symbol (synonym)NAP-22
NAP22
CAP23
CAP-23
Other alias
HGNC (Hugo) BASP1
LocusID (NCBI) 10409
Atlas_Id 50562
Location 5p15.1  [Link to chromosome band 5p15]
Location_base_pair Starts at 17216932 and ends at 17276954 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BASP1 (5p15.1) / BASP1 (5p15.1)BASP1 (5p15.1) / CDK1 (10q21.2)BASP1 (5p15.1) / ST3GAL2 (16q22.1)
COL1A1 (17q21.33) / BASP1 (5p15.1)PLK1 (16p12.2) / BASP1 (5p15.1)SERPINB6 (6p25.2) / BASP1 (5p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BASP1   957
Cards
Entrez_Gene (NCBI)BASP1  10409  brain abundant membrane attached signal protein 1
AliasesCAP-23; CAP23; NAP-22; NAP22
GeneCards (Weizmann)BASP1
Ensembl hg19 (Hinxton)ENSG00000176788 [Gene_View]  chr5:17216932-17276954 [Contig_View]  BASP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176788 [Gene_View]  chr5:17216932-17276954 [Contig_View]  BASP1 [Vega]
ICGC DataPortalENSG00000176788
TCGA cBioPortalBASP1
AceView (NCBI)BASP1
Genatlas (Paris)BASP1
WikiGenes10409
SOURCE (Princeton)BASP1
Genetics Home Reference (NIH)BASP1
Genomic and cartography
GoldenPath hg19 (UCSC)BASP1  -     chr5:17216932-17276954 +  5p15.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BASP1  -     5p15.1   [Description]    (hg38-Dec_2013)
EnsemblBASP1 - 5p15.1 [CytoView hg19]  BASP1 - 5p15.1 [CytoView hg38]
Mapping of homologs : NCBIBASP1 [Mapview hg19]  BASP1 [Mapview hg38]
OMIM605940   
Gene and transcription
Genbank (Entrez)AF039656 AK295995 AK314152 BC000518 BG704783
RefSeq transcript (Entrez)NM_001271606 NM_006317
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)BASP1
Cluster EST : UnigeneHs.646924 [ NCBI ]
CGAP (NCI)Hs.646924
Alternative Splicing GalleryENSG00000176788
Gene ExpressionBASP1 [ NCBI-GEO ]   BASP1 [ EBI - ARRAY_EXPRESS ]   BASP1 [ SEEK ]   BASP1 [ MEM ]
Gene Expression Viewer (FireBrowse)BASP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10409
GTEX Portal (Tissue expression)BASP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP80723   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP80723  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP80723
Splice isoforms : SwissVarP80723
PhosPhoSitePlusP80723
Domains : Interpro (EBI)BASP1   
Domain families : Pfam (Sanger)BASP1 (PF05466)   
Domain families : Pfam (NCBI)pfam05466   
Conserved Domain (NCBI)BASP1
DMDM Disease mutations10409
Blocks (Seattle)BASP1
SuperfamilyP80723
Human Protein AtlasENSG00000176788
Peptide AtlasP80723
HPRD08389
IPIIPI00299024   IPI00908521   
Protein Interaction databases
DIP (DOE-UCLA)P80723
IntAct (EBI)P80723
FunCoupENSG00000176788
BioGRIDBASP1
STRING (EMBL)BASP1
ZODIACBASP1
Ontologies - Pathways
QuickGOP80723
Ontology : AmiGOtranscription corepressor activity  protein binding  nucleus  cytoplasm  cytoskeleton  plasma membrane  thorax and anterior abdomen determination  COP9 signalosome  gonad development  nuclear speck  protein domain specific binding  substantia nigra development  cell junction  growth cone  vesicle  transcription regulatory region DNA binding  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  mesenchymal to epithelial transition  positive regulation of heart growth  diaphragm development  extracellular exosome  metanephric mesenchyme development  glomerular visceral epithelial cell differentiation  positive regulation of metanephric ureteric bud development  
Ontology : EGO-EBItranscription corepressor activity  protein binding  nucleus  cytoplasm  cytoskeleton  plasma membrane  thorax and anterior abdomen determination  COP9 signalosome  gonad development  nuclear speck  protein domain specific binding  substantia nigra development  cell junction  growth cone  vesicle  transcription regulatory region DNA binding  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  mesenchymal to epithelial transition  positive regulation of heart growth  diaphragm development  extracellular exosome  metanephric mesenchyme development  glomerular visceral epithelial cell differentiation  positive regulation of metanephric ureteric bud development  
NDEx NetworkBASP1
Atlas of Cancer Signalling NetworkBASP1
Wikipedia pathwaysBASP1
Orthology - Evolution
OrthoDB10409
GeneTree (enSembl)ENSG00000176788
Phylogenetic Trees/Animal Genes : TreeFamBASP1
HOVERGENP80723
HOGENOMP80723
Homologs : HomoloGeneBASP1
Homology/Alignments : Family Browser (UCSC)BASP1
Gene fusions - Rearrangements
Fusion : MitelmanCOL1A1/BASP1 [17q21.33/5p15.1]  [t(5;17)(p15;q21)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBASP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BASP1
dbVarBASP1
ClinVarBASP1
1000_GenomesBASP1 
Exome Variant ServerBASP1
ExAC (Exome Aggregation Consortium)BASP1 (select the gene name)
Genetic variants : HAPMAP10409
Genomic Variants (DGV)BASP1 [DGVbeta]
DECIPHER (Syndromes)5:17216932-17276954  ENSG00000176788
CONAN: Copy Number AnalysisBASP1 
Mutations
ICGC Data PortalBASP1 
TCGA Data PortalBASP1 
Broad Tumor PortalBASP1
OASIS PortalBASP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBASP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBASP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BASP1
DgiDB (Drug Gene Interaction Database)BASP1
DoCM (Curated mutations)BASP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BASP1 (select a term)
intoGenBASP1
Cancer3DBASP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605940   
Orphanet
MedgenBASP1
Genetic Testing Registry BASP1
NextProtP80723 [Medical]
TSGene10409
GENETestsBASP1
Huge Navigator BASP1 [HugePedia]
snp3D : Map Gene to Disease10409
BioCentury BCIQBASP1
ClinGenBASP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10409
Chemical/Pharm GKB GenePA25261
Clinical trialBASP1
Miscellaneous
canSAR (ICR)BASP1 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBASP1
EVEXBASP1
GoPubMedBASP1
iHOPBASP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:53:45 CEST 2017

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