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BASP1 (brain abundant, membrane attached signal protein 1)

Identity

Other namesCAP-23
CAP23
NAP-22
NAP22
HGNC (Hugo) BASP1
LocusID (NCBI) 10409
Location 5p15.1
Location_base_pair Starts at 17216932 and ends at 17276954 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BASP1   957
Entrez_Gene (NCBI)BASP1  10409  brain abundant, membrane attached signal protein 1
Cards
GeneCards (Weizmann)BASP1
Ensembl (Hinxton)ENSG00000176788 [Gene_View]  chr5:17216932-17276954 [Contig_View]  BASP1 [Vega]
AceView (NCBI)BASP1
Genatlas (Paris)BASP1
SOURCE (Stanford)NM_001271606 NM_006317
Genomic and cartography
GoldenPath (UCSC)BASP1  -  5p15.1   chr5:17216932-17276954 +  5p15.1   [Description]    (hg19-Feb_2009)
EnsemblBASP1 - 5p15.1 [CytoView]
Mapping of homologs : NCBIBASP1 [Mapview]
OMIM605940   
Gene and transcription
Genbank (Entrez)AF039656 AK295995 AK314152 BC000518 BG704783
RefSeq transcript (SRS)NM_001271606 NM_006317
RefSeq transcript (Entrez)NM_001271606 NM_006317
RefSeq genomic (SRS)AC_000137 NC_000005 NC_018916 NT_006576 NW_001838927 NW_004078022
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NT_006576 NW_001838927 NW_004078022
Consensus coding sequences : CCDS (NCBI)BASP1
Cluster EST : UnigeneHs.646924 [ SRS ] Hs.646924 [ NCBI ]
CGAP (NCI)Hs.646924
Alternative Splicing : Fast-db (Paris)GSHG0023831
Alternative Splicing GalleryENSG00000176788
Gene ExpressionBASP1 [ NCBI-GEO ]   BASP1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP80723 (SRS) P80723 (Uniprot)
NextProtP80723
With graphics : InterProP80723
Splice isoforms : SwissVarP80723(Swissvar)
Domains : Interpro (SRS)BASP1   
Domains : Interpro (EBI)BASP1   
Related proteins : CluSTrP80723
Domain families : Pfam (SRS)BASP1 (PF05466)   
Domain families : Pfam (Sanger)BASP1 (PF05466)   
Domain families : Pfam (NCBI)pfam05466   
DMDM10409
Blocks (Seattle)P80723
Human Protein AtlasENSG00000176788
HPRD08389
IPIIPI00299024   IPI00908521   
Protein Interaction databases
DIP (DOE-UCLA)P80723
IntAct (EBI)P80723
FunCoupENSG00000176788
REACTOMEBASP1
Protein Interaction Database10409
BioGRIDBASP1
InParanoidP80723
Interologous Interaction database P80723
IntegromeDBBASP1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)BASP1
SNP (GeneSNP Utah)BASP1
SNP : HGBaseBASP1
Genetic variants : HAPMAPBASP1
Somatic Mutations in Cancer : COSMICBASP1 
CONAN: Copy Number AnalysisBASP1 
Mutations and Diseases : HGMDBASP1
OMIM605940   
GENETests605940   
Disease Genetic AssociationBASP1
Huge Navigator BASP1 [HugePedia]  BASP1 [HugeCancerGEM]
Genomic VariantsBASP1  BASP1 [DGVbeta]
snp3D : Map Gene to Disease10409
General knowledge
Homologs : HomoloGeneBASP1
Homology/Alignments : Family Browser (UCSC)BASP1
Phylogenetic Trees/Animal Genes : TreeFamBASP1
Chemical/Protein Interactions : CTD10409
Chemical/Pharm GKB GenePA25261
Clinical trialBASP1
Cancer Resource (Charite)ENSG00000176788
Ontology : AmiGOtranscription corepressor activity  protein binding  nucleus  cytoplasm  cytoskeleton  plasma membrane  thorax and anterior abdomen determination  signalosome  gonad development  nuclear speck  protein domain specific binding  growth cone  transcription regulatory region DNA binding  negative regulation of transcription, DNA-dependent  negative regulation of transcription, DNA-dependent  mesenchymal to epithelial transition  positive regulation of heart growth  diaphragm development  metanephric mesenchyme development  glomerular visceral epithelial cell differentiation  positive regulation of metanephric ureteric bud development  
Ontology : EGO-EBItranscription corepressor activity  protein binding  nucleus  cytoplasm  cytoskeleton  plasma membrane  thorax and anterior abdomen determination  signalosome  gonad development  nuclear speck  protein domain specific binding  growth cone  transcription regulatory region DNA binding  negative regulation of transcription, DNA-dependent  negative regulation of transcription, DNA-dependent  mesenchymal to epithelial transition  positive regulation of heart growth  diaphragm development  metanephric mesenchyme development  glomerular visceral epithelial cell differentiation  positive regulation of metanephric ureteric bud development  
Other databases
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
PubGeneBASP1
iHOPBASP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:20:10 CEST 2013
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