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BATF (basic leucine zipper ATF-like transcription factor)

Identity

Alias_namesbasic leucine zipper transcription factor
Alias_symbol (synonym)B-ATF
SFA-2
BATF1
Other aliasSFA2
HGNC (Hugo) BATF
LocusID (NCBI) 10538
Atlas_Id 47196
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 75522441 and ends at 75546991 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FLVCR2 (14q24.3) / BATF (14q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(14;14)(q24;q24) FLVCR2/BATF

External links

Nomenclature
HGNC (Hugo)BATF   958
Cards
Entrez_Gene (NCBI)BATF  10538  basic leucine zipper ATF-like transcription factor
AliasesB-ATF; BATF1; SFA-2; SFA2
GeneCards (Weizmann)BATF
Ensembl hg19 (Hinxton)ENSG00000156127 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156127 [Gene_View]  chr14:75522441-75546991 [Contig_View]  BATF [Vega]
ICGC DataPortalENSG00000156127
TCGA cBioPortalBATF
AceView (NCBI)BATF
Genatlas (Paris)BATF
WikiGenes10538
SOURCE (Princeton)BATF
Genetics Home Reference (NIH)BATF
Genomic and cartography
GoldenPath hg38 (UCSC)BATF  -     chr14:75522441-75546991 +  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BATF  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblBATF - 14q24.3 [CytoView hg19]  BATF - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIBATF [Mapview hg19]  BATF [Mapview hg38]
OMIM612476   
Gene and transcription
Genbank (Entrez)BC032294 BP235761 D42106 U15460
RefSeq transcript (Entrez)NM_006399
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BATF
Cluster EST : UnigeneHs.509964 [ NCBI ]
CGAP (NCI)Hs.509964
Alternative Splicing GalleryENSG00000156127
Gene ExpressionBATF [ NCBI-GEO ]   BATF [ EBI - ARRAY_EXPRESS ]   BATF [ SEEK ]   BATF [ MEM ]
Gene Expression Viewer (FireBrowse)BATF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10538
GTEX Portal (Tissue expression)BATF
Human Protein AtlasENSG00000156127-BATF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16520   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16520  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16520
Splice isoforms : SwissVarQ16520
PhosPhoSitePlusQ16520
Domaine pattern : Prosite (Expaxy)BZIP (PS50217)    BZIP_BASIC (PS00036)   
Domains : Interpro (EBI)AP-1    BATF    bZIP   
Domain families : Pfam (Sanger)bZIP_1 (PF00170)   
Domain families : Pfam (NCBI)pfam00170   
Domain families : Smart (EMBL)BRLZ (SM00338)  
Conserved Domain (NCBI)BATF
DMDM Disease mutations10538
Blocks (Seattle)BATF
SuperfamilyQ16520
Human Protein Atlas [tissue]ENSG00000156127-BATF [tissue]
Peptide AtlasQ16520
HPRD09820
IPIIPI00007422   IPI01026428   
Protein Interaction databases
DIP (DOE-UCLA)Q16520
IntAct (EBI)Q16520
FunCoupENSG00000156127
BioGRIDBATF
STRING (EMBL)BATF
ZODIACBATF
Ontologies - Pathways
QuickGOQ16520
Ontology : AmiGORNA polymerase II proximal promoter sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding  cytokine production  lymphoid progenitor cell differentiation  DNA binding transcription factor activity  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  transcription by RNA polymerase II  cellular response to DNA damage stimulus  cytokine-mediated signaling pathway  DNA damage response, signal transduction by p53 class mediator  defense response to protozoan  myeloid dendritic cell differentiation  sequence-specific DNA binding  T-helper 2 cell differentiation  isotype switching  positive regulation of transcription by RNA polymerase II  hematopoietic stem cell differentiation  T-helper 17 cell differentiation  T-helper 17 cell lineage commitment  
Ontology : EGO-EBIRNA polymerase II proximal promoter sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding  cytokine production  lymphoid progenitor cell differentiation  DNA binding transcription factor activity  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  transcription by RNA polymerase II  cellular response to DNA damage stimulus  cytokine-mediated signaling pathway  DNA damage response, signal transduction by p53 class mediator  defense response to protozoan  myeloid dendritic cell differentiation  sequence-specific DNA binding  T-helper 2 cell differentiation  isotype switching  positive regulation of transcription by RNA polymerase II  hematopoietic stem cell differentiation  T-helper 17 cell differentiation  T-helper 17 cell lineage commitment  
NDEx NetworkBATF
Atlas of Cancer Signalling NetworkBATF
Wikipedia pathwaysBATF
Orthology - Evolution
OrthoDB10538
GeneTree (enSembl)ENSG00000156127
Phylogenetic Trees/Animal Genes : TreeFamBATF
HOVERGENQ16520
HOGENOMQ16520
Homologs : HomoloGeneBATF
Homology/Alignments : Family Browser (UCSC)BATF
Gene fusions - Rearrangements
Fusion : QuiverBATF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBATF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BATF
dbVarBATF
ClinVarBATF
1000_GenomesBATF 
Exome Variant ServerBATF
ExAC (Exome Aggregation Consortium)ENSG00000156127
GNOMAD BrowserENSG00000156127
Genetic variants : HAPMAP10538
Genomic Variants (DGV)BATF [DGVbeta]
DECIPHERBATF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBATF 
Mutations
ICGC Data PortalBATF 
TCGA Data PortalBATF 
Broad Tumor PortalBATF
OASIS PortalBATF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBATF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBATF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BATF
DgiDB (Drug Gene Interaction Database)BATF
DoCM (Curated mutations)BATF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BATF (select a term)
intoGenBATF
Cancer3DBATF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612476   
Orphanet
DisGeNETBATF
MedgenBATF
Genetic Testing Registry BATF
NextProtQ16520 [Medical]
TSGene10538
GENETestsBATF
Target ValidationBATF
Huge Navigator BATF [HugePedia]
snp3D : Map Gene to Disease10538
BioCentury BCIQBATF
ClinGenBATF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10538
Chemical/Pharm GKB GenePA25268
Clinical trialBATF
Miscellaneous
canSAR (ICR)BATF (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBATF
EVEXBATF
GoPubMedBATF
iHOPBATF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 28 13:02:47 CET 2018
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