| Nomenclature |
|---|
| HGNC (Hugo) | BATF 958 |
| Cards |
|---|
| Entrez_Gene (NCBI) | BATF 10538 basic leucine zipper ATF-like transcription factor |
| Aliases | B-ATF; BATF1; SFA-2; SFA2 |
| GeneCards (Weizmann) | BATF |
| Ensembl hg19 (Hinxton) | ENSG00000156127 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000156127 [Gene_View] chr14:75522441-75546991 [Contig_View] BATF [Vega] |
| ICGC DataPortal | ENSG00000156127 |
| TCGA cBioPortal | BATF |
| AceView (NCBI) | BATF |
| Genatlas (Paris) | BATF |
| WikiGenes | 10538 |
| SOURCE (Princeton) | BATF |
| Genetics Home Reference (NIH) | BATF |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | BATF - chr14:75522441-75546991 + 14q24.3 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | BATF - 14q24.3 [Description] (hg19-Feb_2009) |
| Ensembl | BATF - 14q24.3 [CytoView hg19] BATF - 14q24.3 [CytoView hg38] |
| Mapping of homologs : NCBI | BATF [Mapview hg19] BATF [Mapview hg38] |
| OMIM | 612476 |
| Gene and transcription |
|---|
| Genbank (Entrez) | BC032294 BP235761 D42106 U15460 |
| RefSeq transcript (Entrez) | NM_006399 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | BATF |
| Cluster EST : Unigene | Hs.509964 [ NCBI ] |
| CGAP (NCI) | Hs.509964 |
| Alternative Splicing Gallery | ENSG00000156127 |
| Gene Expression | BATF [ NCBI-GEO ] BATF [ EBI - ARRAY_EXPRESS ]
BATF [ SEEK ] BATF [ MEM ] |
| Gene Expression Viewer (FireBrowse) | BATF [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevisible | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 10538 |
| GTEX Portal (Tissue expression) | BATF |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q16520 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q16520 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q16520 |
| Splice isoforms : SwissVar | Q16520 |
| PhosPhoSitePlus | Q16520 |
| Domaine pattern : Prosite (Expaxy) | BZIP (PS50217) BZIP_BASIC (PS00036) |
| Domains : Interpro (EBI) | AP-1 BATF bZIP |
| Domain families : Pfam (Sanger) | bZIP_1 (PF00170) |
| Domain families : Pfam (NCBI) | pfam00170 |
| Domain families : Smart (EMBL) | BRLZ (SM00338) |
| Conserved Domain (NCBI) | BATF |
| DMDM Disease mutations | 10538 |
| Blocks (Seattle) | BATF |
| Superfamily | Q16520 |
| Human Protein Atlas | ENSG00000156127 |
| Peptide Atlas | Q16520 |
| HPRD | 09820 |
| IPI | IPI00007422 IPI01026428 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q16520 |
| IntAct (EBI) | Q16520 |
| FunCoup | ENSG00000156127 |
| BioGRID | BATF |
| STRING (EMBL) | BATF |
| ZODIAC | BATF |
| Ontologies - Pathways |
|---|
| QuickGO | Q16520 |
| Ontology : AmiGO | RNA polymerase II core promoter proximal region sequence-specific DNA binding transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding cytokine production lymphoid progenitor cell differentiation transcription factor activity, sequence-specific DNA binding protein binding nucleus nucleoplasm nucleoplasm cytoplasm transcription from RNA polymerase II promoter cellular response to DNA damage stimulus DNA damage response, signal transduction by p53 class mediator defense response to protozoan myeloid dendritic cell differentiation sequence-specific DNA binding T-helper 2 cell differentiation isotype switching positive regulation of transcription from RNA polymerase II promoter hematopoietic stem cell differentiation T-helper 17 cell differentiation T-helper 17 cell lineage commitment |
| Ontology : EGO-EBI | RNA polymerase II core promoter proximal region sequence-specific DNA binding transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding cytokine production lymphoid progenitor cell differentiation transcription factor activity, sequence-specific DNA binding protein binding nucleus nucleoplasm nucleoplasm cytoplasm transcription from RNA polymerase II promoter cellular response to DNA damage stimulus DNA damage response, signal transduction by p53 class mediator defense response to protozoan myeloid dendritic cell differentiation sequence-specific DNA binding T-helper 2 cell differentiation isotype switching positive regulation of transcription from RNA polymerase II promoter hematopoietic stem cell differentiation T-helper 17 cell differentiation T-helper 17 cell lineage commitment |
| NDEx Network | BATF |
| Atlas of Cancer Signalling Network | BATF |
| Wikipedia pathways | BATF |
| Orthology - Evolution |
|---|
| OrthoDB | 10538 |
| GeneTree (enSembl) | ENSG00000156127 |
| Phylogenetic Trees/Animal Genes : TreeFam | BATF |
| HOVERGEN | Q16520 |
| HOGENOM | Q16520 |
| Homologs : HomoloGene | BATF |
| Homology/Alignments : Family Browser (UCSC) | BATF |
| Gene fusions - Rearrangements |
|---|
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | BATF [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | BATF |
| dbVar | BATF |
| ClinVar | BATF |
| 1000_Genomes | BATF |
| Exome Variant Server | BATF |
| ExAC (Exome Aggregation Consortium) | BATF (select the gene name) |
| Genetic variants : HAPMAP | 10538 |
| Genomic Variants (DGV) | BATF [DGVbeta] |
| DECIPHER | BATF [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | BATF |
| Mutations |
|---|
| ICGC Data Portal | BATF |
| TCGA Data Portal | BATF |
| Broad Tumor Portal | BATF |
| OASIS Portal | BATF [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | BATF [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | BATF |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search BATF |
| DgiDB (Drug Gene Interaction Database) | BATF |
| DoCM (Curated mutations) | BATF (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | BATF (select a term) |
| intoGen | BATF |
| Cancer3D | BATF(select the gene name) |
| Impact of mutations | [PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 612476 |
| Orphanet | |
| Medgen | BATF |
| Genetic Testing Registry | BATF
|
| NextProt | Q16520 [Medical] |
| TSGene | 10538 |
| GENETests | BATF |
| Target Validation | BATF |
| Huge Navigator |
BATF [HugePedia] |
| snp3D : Map Gene to Disease | 10538 |
| BioCentury BCIQ | BATF |
| ClinGen | BATF |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 10538 |
| Chemical/Pharm GKB Gene | PA25268 |
| Clinical trial | BATF |
| Miscellaneous |
|---|
| canSAR (ICR) | BATF (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 29 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | BATF |
| EVEX | BATF |
| GoPubMed | BATF |
| iHOP | BATF |
