| Nomenclature |
|---|
| HGNC (Hugo) | BATF 958 |
| Cards |
|---|
| Entrez_Gene (NCBI) | BATF 10538 basic leucine zipper ATF-like transcription factor |
| Aliases | B-ATF; BATF1; SFA-2; SFA2 |
| GeneCards (Weizmann) | BATF |
| Ensembl hg19 (Hinxton) | ENSG00000156127 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000156127 [Gene_View] ENSG00000156127 [Sequence] chr14:75522441-75546991 [Contig_View] BATF [Vega] |
| ICGC DataPortal | ENSG00000156127 |
| TCGA cBioPortal | BATF |
| AceView (NCBI) | BATF |
| Genatlas (Paris) | BATF |
| WikiGenes | 10538 |
| SOURCE (Princeton) | BATF |
| Genetics Home Reference (NIH) | BATF |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | BATF - chr14:75522441-75546991 + 14q24.3 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | BATF - 14q24.3 [Description] (hg19-Feb_2009) |
| Ensembl | BATF - 14q24.3 [CytoView hg19] BATF - 14q24.3 [CytoView hg38] |
| Mapping of homologs : NCBI | BATF [Mapview hg19] BATF [Mapview hg38] |
| OMIM | 612476 |
| Gene and transcription |
|---|
| Genbank (Entrez) | BC032294 BP235761 D42106 U15460 |
| RefSeq transcript (Entrez) | NM_006399 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | BATF |
| Cluster EST : Unigene | Hs.509964 [ NCBI ] |
| CGAP (NCI) | Hs.509964 |
| Alternative Splicing Gallery | ENSG00000156127 |
| Gene Expression | BATF [ NCBI-GEO ] BATF [ EBI - ARRAY_EXPRESS ]
BATF [ SEEK ] BATF [ MEM ] |
| Gene Expression Viewer (FireBrowse) | BATF [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 10538 |
| GTEX Portal (Tissue expression) | BATF |
| Human Protein Atlas | ENSG00000156127-BATF [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q16520 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q16520 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q16520 |
| Splice isoforms : SwissVar | Q16520 |
| PhosPhoSitePlus | Q16520 |
| Domaine pattern : Prosite (Expaxy) | BZIP (PS50217) BZIP_BASIC (PS00036) |
| Domains : Interpro (EBI) | AP-1 BATF bZIP |
| Domain families : Pfam (Sanger) | bZIP_1 (PF00170) |
| Domain families : Pfam (NCBI) | pfam00170 |
| Domain families : Smart (EMBL) | BRLZ (SM00338) |
| Conserved Domain (NCBI) | BATF |
| DMDM Disease mutations | 10538 |
| Blocks (Seattle) | BATF |
| Superfamily | Q16520 |
| Human Protein Atlas [tissue] | ENSG00000156127-BATF [tissue] |
| Peptide Atlas | Q16520 |
| HPRD | 09820 |
| IPI | IPI00007422 IPI01026428 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q16520 |
| IntAct (EBI) | Q16520 |
| FunCoup | ENSG00000156127 |
| BioGRID | BATF |
| STRING (EMBL) | BATF |
| ZODIAC | BATF |
| Ontologies - Pathways |
|---|
| QuickGO | Q16520 |
| Ontology : AmiGO | RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific proximal promoter DNA-binding transcription activator activity, RNA polymerase II-specific cytokine production lymphoid progenitor cell differentiation DNA-binding transcription factor activity protein binding nucleus nucleus nucleoplasm nucleoplasm cytoplasm cellular response to DNA damage stimulus cytokine-mediated signaling pathway DNA damage response, signal transduction by p53 class mediator defense response to protozoan myeloid dendritic cell differentiation sequence-specific DNA binding T-helper 2 cell differentiation isotype switching positive regulation of transcription by RNA polymerase II hematopoietic stem cell differentiation T-helper 17 cell differentiation T-helper 17 cell lineage commitment |
| Ontology : EGO-EBI | RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific proximal promoter DNA-binding transcription activator activity, RNA polymerase II-specific cytokine production lymphoid progenitor cell differentiation DNA-binding transcription factor activity protein binding nucleus nucleus nucleoplasm nucleoplasm cytoplasm cellular response to DNA damage stimulus cytokine-mediated signaling pathway DNA damage response, signal transduction by p53 class mediator defense response to protozoan myeloid dendritic cell differentiation sequence-specific DNA binding T-helper 2 cell differentiation isotype switching positive regulation of transcription by RNA polymerase II hematopoietic stem cell differentiation T-helper 17 cell differentiation T-helper 17 cell lineage commitment |
| NDEx Network | BATF |
| Atlas of Cancer Signalling Network | BATF |
| Wikipedia pathways | BATF |
| Orthology - Evolution |
|---|
| OrthoDB | 10538 |
| GeneTree (enSembl) | ENSG00000156127 |
| Phylogenetic Trees/Animal Genes : TreeFam | BATF |
| HOVERGEN | Q16520 |
| HOGENOM | Q16520 |
| Homologs : HomoloGene | BATF |
| Homology/Alignments : Family Browser (UCSC) | BATF |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | BATF |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | BATF [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | BATF |
| dbVar | BATF |
| ClinVar | BATF |
| 1000_Genomes | BATF |
| Exome Variant Server | BATF |
| ExAC (Exome Aggregation Consortium) | ENSG00000156127 |
| GNOMAD Browser | ENSG00000156127 |
| Varsome Browser | BATF |
| Genetic variants : HAPMAP | 10538 |
| Genomic Variants (DGV) | BATF [DGVbeta] |
| DECIPHER | BATF [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | BATF |
| Mutations |
|---|
| ICGC Data Portal | BATF |
| TCGA Data Portal | BATF |
| Broad Tumor Portal | BATF |
| OASIS Portal | BATF [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | BATF [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | BATF |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search BATF |
| DgiDB (Drug Gene Interaction Database) | BATF |
| DoCM (Curated mutations) | BATF (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | BATF (select a term) |
| intoGen | BATF |
| Cancer3D | BATF(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 612476 |
| Orphanet | |
| DisGeNET | BATF |
| Medgen | BATF |
| Genetic Testing Registry | BATF
|
| NextProt | Q16520 [Medical] |
| TSGene | 10538 |
| GENETests | BATF |
| Target Validation | BATF |
| Huge Navigator |
BATF [HugePedia] |
| snp3D : Map Gene to Disease | 10538 |
| BioCentury BCIQ | BATF |
| ClinGen | BATF |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 10538 |
| Chemical/Pharm GKB Gene | PA25268 |
| Clinical trial | BATF |
| Miscellaneous |
|---|
| canSAR (ICR) | BATF (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 35 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | BATF |
| EVEX | BATF |
| GoPubMed | BATF |
| iHOP | BATF |
