| Nomenclature |
HGNC (Hugo) | BATF 958 |
| Cards |
Entrez_Gene (NCBI) | BATF basic leucine zipper ATF-like transcription factor |
Aliases | B-ATF; BATF1; SFA-2; SFA2 |
GeneCards (Weizmann) | BATF |
Ensembl hg19 (Hinxton) | ENSG00000156127 [Gene_View] |
Ensembl hg38 (Hinxton) | ENSG00000156127 [Gene_View]  ENSG00000156127 [Sequence] chr14:75522469-75546991 [Contig_View] BATF [Vega] |
ICGC DataPortal | ENSG00000156127 |
TCGA cBioPortal | BATF |
AceView (NCBI) | BATF |
Genatlas (Paris) | BATF |
SOURCE (Princeton) | BATF |
Genetics Home Reference (NIH) | BATF |
| Genomic and cartography |
GoldenPath hg38 (UCSC) | BATF - chr14:75522469-75546991 + 14q24.3 [Description] (hg38-Dec_2013) |
GoldenPath hg19 (UCSC) | BATF - 14q24.3 [Description] (hg19-Feb_2009) |
GoldenPath | BATF - 14q24.3 [CytoView hg19] BATF - 14q24.3 [CytoView hg38] |
ImmunoBase | ENSG00000156127 |
genome Data Viewer NCBI | BATF [Mapview hg19] |
OMIM | 612476 |
| Gene and transcription |
Genbank (Entrez) | BC032294 BP235761 D42106 U15460 |
RefSeq transcript (Entrez) | NM_006399 |
RefSeq genomic (Entrez) | |
Consensus coding sequences : CCDS (NCBI) | BATF |
Alternative Splicing Gallery | ENSG00000156127 |
Gene Expression | BATF [ NCBI-GEO ] BATF [ EBI - ARRAY_EXPRESS ]
BATF [ SEEK ] BATF [ MEM ] |
Gene Expression Viewer (FireBrowse) | BATF [ Firebrowse - Broad ] |
Genevisible | Expression of BATF in : [tissues]  [cell-lines]  [cancer]  [perturbations]   |
BioGPS (Tissue expression) | 10538 |
GTEX Portal (Tissue expression) | BATF |
Human Protein Atlas | ENSG00000156127-BATF [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
UniProt/SwissProt | Q16520 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
NextProt | Q16520 [Sequence] [Exons] [Medical] [Publications] |
With graphics : InterPro | Q16520 |
Splice isoforms : SwissVar | Q16520 |
PhosPhoSitePlus | Q16520 |
Domaine pattern : Prosite (Expaxy) | BZIP (PS50217) BZIP_BASIC (PS00036) |
Domains : Interpro (EBI) | AP-1 BATF bZIP |
Domain families : Pfam (Sanger) | bZIP_1 (PF00170) |
Domain families : Pfam (NCBI) | pfam00170 |
Domain families : Smart (EMBL) | BRLZ (SM00338) |
Conserved Domain (NCBI) | BATF |
Blocks (Seattle) | BATF |
Superfamily | Q16520 |
Human Protein Atlas [tissue] | ENSG00000156127-BATF [tissue] |
Peptide Atlas | Q16520 |
HPRD | 09820 |
IPI | IPI00007422 IPI01026428 |
| Protein Interaction databases |
DIP (DOE-UCLA) | Q16520 |
IntAct (EBI) | Q16520 |
BioGRID | BATF |
STRING (EMBL) | BATF |
ZODIAC | BATF |
| Ontologies - Pathways |
QuickGO | Q16520 |
Ontology : AmiGO | nuclear chromatin RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific cytokine production lymphoid progenitor cell differentiation DNA-binding transcription factor activity protein binding nucleus nucleus nucleoplasm nucleoplasm cytoplasm regulation of transcription by RNA polymerase II cellular response to DNA damage stimulus cytokine-mediated signaling pathway DNA damage response, signal transduction by p53 class mediator defense response to protozoan myeloid dendritic cell differentiation sequence-specific DNA binding T-helper 2 cell differentiation isotype switching positive regulation of transcription by RNA polymerase II hematopoietic stem cell differentiation T-helper 17 cell differentiation T-helper 17 cell lineage commitment |
Ontology : EGO-EBI | nuclear chromatin RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific cytokine production lymphoid progenitor cell differentiation DNA-binding transcription factor activity protein binding nucleus nucleus nucleoplasm nucleoplasm cytoplasm regulation of transcription by RNA polymerase II cellular response to DNA damage stimulus cytokine-mediated signaling pathway DNA damage response, signal transduction by p53 class mediator defense response to protozoan myeloid dendritic cell differentiation sequence-specific DNA binding T-helper 2 cell differentiation isotype switching positive regulation of transcription by RNA polymerase II hematopoietic stem cell differentiation T-helper 17 cell differentiation T-helper 17 cell lineage commitment |
NDEx Network | BATF |
Atlas of Cancer Signalling Network | BATF |
Wikipedia pathways | BATF |
| Orthology - Evolution |
OrthoDB | 10538 |
GeneTree (enSembl) | ENSG00000156127 |
Phylogenetic Trees/Animal Genes : TreeFam | BATF |
HOGENOM | Q16520 |
Homologs : HomoloGene | BATF |
Homology/Alignments : Family Browser (UCSC) | BATF |
| Gene fusions - Rearrangements |
Fusion : Quiver | BATF |
| Polymorphisms : SNP and Copy number variants |
NCBI Variation Viewer | BATF [hg38] |
dbVar | BATF |
ClinVar | BATF |
Monarch | BATF |
1000_Genomes | BATF |
Exome Variant Server | BATF |
GNOMAD Browser | ENSG00000156127 |
Varsome Browser | BATF |
Genomic Variants (DGV) | BATF [DGVbeta] |
DECIPHER | BATF [patients] [syndromes] [variants] [genes] |
CONAN: Copy Number Analysis | BATF |
| Mutations |
ICGC Data Portal | BATF |
TCGA Data Portal | BATF |
Broad Tumor Portal | BATF |
OASIS Portal | BATF [ Somatic mutations - Copy number] |
Somatic Mutations in Cancer : COSMIC | BATF [overview] [genome browser] [tissue] [distribution] |
Somatic Mutations in Cancer : COSMIC3D | BATF |
Mutations and Diseases : HGMD | BATF |
LOVD (Leiden Open Variation Database) | Whole genome datasets |
LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
BioMuta | search BATF |
DgiDB (Drug Gene Interaction Database) | BATF |
DoCM (Curated mutations) | BATF (select the gene name) |
CIViC (Clinical Interpretations of Variants in Cancer) | BATF (select a term) |
intoGen | BATF |
Cancer3D | BATF(select the gene name) |
Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
---|
OMIM | 612476 |
Orphanet | |
DisGeNET | BATF |
Medgen | BATF |
Genetic Testing Registry | BATF
|
NextProt | Q16520 [Medical] |
GENETests | BATF |
Target Validation | BATF |
Huge Navigator |
BATF [HugePedia] |
ClinGen | BATF |
| Clinical trials, drugs, therapy |
---|
MyCancerGenome | BATF |
Protein Interactions : CTD | |
Pharm GKB Gene | PA25268 |
Pharm GKB Pathways | PA165985892 |
Pharos | Q16520 |
Clinical trial | BATF |
| Miscellaneous |
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canSAR (ICR) | BATF (select the gene name) |
Harmonizome | BATF |
DataMed Index | BATF |
| Probes |
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| Litterature |
---|
PubMed | 39 Pubmed reference(s) in Entrez |
GeneRIFs | Gene References Into Functions (Entrez) |
EVEX | BATF |