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BATF2 (basic leucine zipper ATF-like transcription factor 2)

Identity

Alias_namesbasic leucine zipper transcription factor
Alias_symbol (synonym)MGC20410
Other aliasSARI
HGNC (Hugo) BATF2
LocusID (NCBI) 116071
Atlas_Id 52085
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64987945 and ends at 64990277 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BATF2 (11q13.1) / ACTG2 (2p13.1)EHD1 (11q13.1) / BATF2 (11q13.1)FARS2 (6p25.1) / BATF2 (11q13.1)
EHD1 11q13.1 / BATF2 11q13.1FARS2 6p25.1 / BATF2 11q13.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BATF2   25163
Cards
Entrez_Gene (NCBI)BATF2  116071  basic leucine zipper ATF-like transcription factor 2
AliasesSARI
GeneCards (Weizmann)BATF2
Ensembl hg19 (Hinxton)ENSG00000168062 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168062 [Gene_View]  chr11:64987945-64990277 [Contig_View]  BATF2 [Vega]
ICGC DataPortalENSG00000168062
TCGA cBioPortalBATF2
AceView (NCBI)BATF2
Genatlas (Paris)BATF2
WikiGenes116071
SOURCE (Princeton)BATF2
Genetics Home Reference (NIH)BATF2
Genomic and cartography
GoldenPath hg38 (UCSC)BATF2  -     chr11:64987945-64990277 -  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BATF2  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblBATF2 - 11q13.1 [CytoView hg19]  BATF2 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIBATF2 [Mapview hg19]  BATF2 [Mapview hg38]
OMIM614983   
Gene and transcription
Genbank (Entrez)AK092453 AK096702 AK300917 BC011931 BC012330
RefSeq transcript (Entrez)NM_001300807 NM_001300808 NM_138456
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BATF2
Cluster EST : UnigeneHs.124840 [ NCBI ]
CGAP (NCI)Hs.124840
Alternative Splicing GalleryENSG00000168062
Gene ExpressionBATF2 [ NCBI-GEO ]   BATF2 [ EBI - ARRAY_EXPRESS ]   BATF2 [ SEEK ]   BATF2 [ MEM ]
Gene Expression Viewer (FireBrowse)BATF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116071
GTEX Portal (Tissue expression)BATF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1L9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1L9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1L9
Splice isoforms : SwissVarQ8N1L9
PhosPhoSitePlusQ8N1L9
Domaine pattern : Prosite (Expaxy)BZIP (PS50217)    BZIP_BASIC (PS00036)   
Domains : Interpro (EBI)AP-1    BATF2    bZIP   
Domain families : Pfam (Sanger)bZIP_1 (PF00170)   
Domain families : Pfam (NCBI)pfam00170   
Domain families : Smart (EMBL)BRLZ (SM00338)  
Conserved Domain (NCBI)BATF2
DMDM Disease mutations116071
Blocks (Seattle)BATF2
SuperfamilyQ8N1L9
Human Protein AtlasENSG00000168062
Peptide AtlasQ8N1L9
HPRD14470
IPIIPI00409656   IPI00980331   IPI00847397   IPI00979596   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1L9
IntAct (EBI)Q8N1L9
FunCoupENSG00000168062
BioGRIDBATF2
STRING (EMBL)BATF2
ZODIACBATF2
Ontologies - Pathways
QuickGOQ8N1L9
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  defense response to protozoan  myeloid dendritic cell differentiation  sequence-specific DNA binding  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  defense response to protozoan  myeloid dendritic cell differentiation  sequence-specific DNA binding  
NDEx NetworkBATF2
Atlas of Cancer Signalling NetworkBATF2
Wikipedia pathwaysBATF2
Orthology - Evolution
OrthoDB116071
GeneTree (enSembl)ENSG00000168062
Phylogenetic Trees/Animal Genes : TreeFamBATF2
HOVERGENQ8N1L9
HOGENOMQ8N1L9
Homologs : HomoloGeneBATF2
Homology/Alignments : Family Browser (UCSC)BATF2
Gene fusions - Rearrangements
Fusion : MitelmanEHD1/BATF2 [11q13.1/11q13.1]  [t(11;11)(q13;q13)]  
Fusion : MitelmanFARS2/BATF2 [6p25.1/11q13.1]  [t(6;11)(p25;q13)]  
Fusion: TCGAEHD1 11q13.1 BATF2 11q13.1 LUAD
Fusion: TCGAFARS2 6p25.1 BATF2 11q13.1 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBATF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BATF2
dbVarBATF2
ClinVarBATF2
1000_GenomesBATF2 
Exome Variant ServerBATF2
ExAC (Exome Aggregation Consortium)BATF2 (select the gene name)
Genetic variants : HAPMAP116071
Genomic Variants (DGV)BATF2 [DGVbeta]
DECIPHERBATF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBATF2 
Mutations
ICGC Data PortalBATF2 
TCGA Data PortalBATF2 
Broad Tumor PortalBATF2
OASIS PortalBATF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBATF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBATF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BATF2
DgiDB (Drug Gene Interaction Database)BATF2
DoCM (Curated mutations)BATF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BATF2 (select a term)
intoGenBATF2
Cancer3DBATF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614983   
Orphanet
MedgenBATF2
Genetic Testing Registry BATF2
NextProtQ8N1L9 [Medical]
TSGene116071
GENETestsBATF2
Target ValidationBATF2
Huge Navigator BATF2 [HugePedia]
snp3D : Map Gene to Disease116071
BioCentury BCIQBATF2
ClinGenBATF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116071
Chemical/Pharm GKB GenePA143485315
Clinical trialBATF2
Miscellaneous
canSAR (ICR)BATF2 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBATF2
EVEXBATF2
GoPubMedBATF2
iHOPBATF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:25:16 CEST 2017

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