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BATF3 (basic leucine zipper ATF-like transcription factor 3)

Identity

Alias_namesbasic leucine zipper transcription factor, ATF-like 3
Alias_symbol (synonym)JUNDM1
SNFT
JDP1
Other alias
HGNC (Hugo) BATF3
LocusID (NCBI) 55509
Atlas_Id 60710
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 212686417 and ends at 212699985 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BATF3 (1q32.3) / BATF3 (1q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BATF3   28915
Cards
Entrez_Gene (NCBI)BATF3  55509  basic leucine zipper ATF-like transcription factor 3
AliasesJDP1; JUNDM1; SNFT
GeneCards (Weizmann)BATF3
Ensembl hg19 (Hinxton)ENSG00000123685 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123685 [Gene_View]  chr1:212686417-212699985 [Contig_View]  BATF3 [Vega]
ICGC DataPortalENSG00000123685
TCGA cBioPortalBATF3
AceView (NCBI)BATF3
Genatlas (Paris)BATF3
WikiGenes55509
SOURCE (Princeton)BATF3
Genetics Home Reference (NIH)BATF3
Genomic and cartography
GoldenPath hg38 (UCSC)BATF3  -     chr1:212686417-212699985 -  1q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BATF3  -     1q32.3   [Description]    (hg19-Feb_2009)
EnsemblBATF3 - 1q32.3 [CytoView hg19]  BATF3 - 1q32.3 [CytoView hg38]
Mapping of homologs : NCBIBATF3 [Mapview hg19]  BATF3 [Mapview hg38]
OMIM612470   
Gene and transcription
Genbank (Entrez)AF255346 AK093671 AK094854 BC117489 BC117491
RefSeq transcript (Entrez)NM_018664
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BATF3
Cluster EST : UnigeneHs.62919 [ NCBI ]
CGAP (NCI)Hs.62919
Alternative Splicing GalleryENSG00000123685
Gene ExpressionBATF3 [ NCBI-GEO ]   BATF3 [ EBI - ARRAY_EXPRESS ]   BATF3 [ SEEK ]   BATF3 [ MEM ]
Gene Expression Viewer (FireBrowse)BATF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55509
GTEX Portal (Tissue expression)BATF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NR55   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NR55  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NR55
Splice isoforms : SwissVarQ9NR55
PhosPhoSitePlusQ9NR55
Domaine pattern : Prosite (Expaxy)BZIP (PS50217)    BZIP_BASIC (PS00036)   
Domains : Interpro (EBI)AP-1    bZIP    p21SNFT   
Domain families : Pfam (Sanger)bZIP_1 (PF00170)   
Domain families : Pfam (NCBI)pfam00170   
Domain families : Smart (EMBL)BRLZ (SM00338)  
Conserved Domain (NCBI)BATF3
DMDM Disease mutations55509
Blocks (Seattle)BATF3
SuperfamilyQ9NR55
Human Protein AtlasENSG00000123685
Peptide AtlasQ9NR55
HPRD18081
IPIIPI00032898   
Protein Interaction databases
DIP (DOE-UCLA)Q9NR55
IntAct (EBI)Q9NR55
FunCoupENSG00000123685
BioGRIDBATF3
STRING (EMBL)BATF3
ZODIACBATF3
Ontologies - Pathways
QuickGOQ9NR55
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcription factor activity, sequence-specific DNA binding  transcription corepressor activity  protein binding  nucleus  transcription from RNA polymerase II promoter  response to virus  myeloid dendritic cell differentiation  dendritic cell differentiation  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcription factor activity, sequence-specific DNA binding  transcription corepressor activity  protein binding  nucleus  transcription from RNA polymerase II promoter  response to virus  myeloid dendritic cell differentiation  dendritic cell differentiation  
NDEx NetworkBATF3
Atlas of Cancer Signalling NetworkBATF3
Wikipedia pathwaysBATF3
Orthology - Evolution
OrthoDB55509
GeneTree (enSembl)ENSG00000123685
Phylogenetic Trees/Animal Genes : TreeFamBATF3
HOVERGENQ9NR55
HOGENOMQ9NR55
Homologs : HomoloGeneBATF3
Homology/Alignments : Family Browser (UCSC)BATF3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBATF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BATF3
dbVarBATF3
ClinVarBATF3
1000_GenomesBATF3 
Exome Variant ServerBATF3
ExAC (Exome Aggregation Consortium)BATF3 (select the gene name)
Genetic variants : HAPMAP55509
Genomic Variants (DGV)BATF3 [DGVbeta]
DECIPHERBATF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBATF3 
Mutations
ICGC Data PortalBATF3 
TCGA Data PortalBATF3 
Broad Tumor PortalBATF3
OASIS PortalBATF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBATF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBATF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BATF3
DgiDB (Drug Gene Interaction Database)BATF3
DoCM (Curated mutations)BATF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BATF3 (select a term)
intoGenBATF3
Cancer3DBATF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612470   
Orphanet
MedgenBATF3
Genetic Testing Registry BATF3
NextProtQ9NR55 [Medical]
TSGene55509
GENETestsBATF3
Target ValidationBATF3
Huge Navigator BATF3 [HugePedia]
snp3D : Map Gene to Disease55509
BioCentury BCIQBATF3
ClinGenBATF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55509
Chemical/Pharm GKB GenePA162377349
Clinical trialBATF3
Miscellaneous
canSAR (ICR)BATF3 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBATF3
EVEXBATF3
GoPubMedBATF3
iHOPBATF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:30 CEST 2017

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