Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BAZ1A (bromodomain adjacent to zinc finger domain 1A)

Identity

Alias_symbol (synonym)hACF1
ACF1
WALp1
WCRF180
Other alias
HGNC (Hugo) BAZ1A
LocusID (NCBI) 11177
Atlas_Id 52060
Location 14q13.1  [Link to chromosome band 14q13]
Location_base_pair Starts at 35221937 and ends at 35344853 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AJUBA (14q11.2) / BAZ1A (14q13.1)BAZ1A (14q13.1) / DOCK9 (13q32.3)BAZ1A (14q13.1) / MYO1E (15q22.2)
BAZ1A (14q13.1) / NKX2-1 (14q13.3)BAZ1A (14q13.1) / RNF115 (1q21.1)BAZ1A (14q13.1) / SFTA3 (14q13.3)
CCAR1 (10q21.3) / BAZ1A (14q13.1)DOCK9 (13q32.3) / BAZ1A (14q13.1)ZNF253 (19p13.11) / BAZ1A (14q13.1)
BAZ1A 14q13.1 / NKX2-1 14q13.3BAZ1A 14q13.1 / RNF115 1q21.1ZNF253 19p13.11 / BAZ1A 14q13.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BAZ1A   960
Cards
Entrez_Gene (NCBI)BAZ1A  11177  bromodomain adjacent to zinc finger domain 1A
AliasesACF1; WALp1; WCRF180; hACF1
GeneCards (Weizmann)BAZ1A
Ensembl hg19 (Hinxton)ENSG00000198604 [Gene_View]  chr14:35221937-35344853 [Contig_View]  BAZ1A [Vega]
Ensembl hg38 (Hinxton)ENSG00000198604 [Gene_View]  chr14:35221937-35344853 [Contig_View]  BAZ1A [Vega]
ICGC DataPortalENSG00000198604
TCGA cBioPortalBAZ1A
AceView (NCBI)BAZ1A
Genatlas (Paris)BAZ1A
WikiGenes11177
SOURCE (Princeton)BAZ1A
Genetics Home Reference (NIH)BAZ1A
Genomic and cartography
GoldenPath hg19 (UCSC)BAZ1A  -     chr14:35221937-35344853 -  14q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BAZ1A  -     14q13.1   [Description]    (hg38-Dec_2013)
EnsemblBAZ1A - 14q13.1 [CytoView hg19]  BAZ1A - 14q13.1 [CytoView hg38]
Mapping of homologs : NCBIBAZ1A [Mapview hg19]  BAZ1A [Mapview hg38]
OMIM605680   
Gene and transcription
Genbank (Entrez)AB032252 AB209255 AF086397 AF161435 AF213467
RefSeq transcript (Entrez)NM_013448 NM_182648
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)BAZ1A
Cluster EST : UnigeneHs.509140 [ NCBI ]
CGAP (NCI)Hs.509140
Alternative Splicing GalleryENSG00000198604
Gene ExpressionBAZ1A [ NCBI-GEO ]   BAZ1A [ EBI - ARRAY_EXPRESS ]   BAZ1A [ SEEK ]   BAZ1A [ MEM ]
Gene Expression Viewer (FireBrowse)BAZ1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11177
GTEX Portal (Tissue expression)BAZ1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRL2
Splice isoforms : SwissVarQ9NRL2
PhosPhoSitePlusQ9NRL2
Domaine pattern : Prosite (Expaxy)BROMODOMAIN_1 (PS00633)    BROMODOMAIN_2 (PS50014)    DDT (PS50827)    WAC (PS51136)    ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Bromodomain    Bromodomain_CS    DDT_dom    DDT_dom_subgr    DDT_dom_superfamily    WHIM1_dom    WHIM3_domain    WSTF_Acf1_Cbp146    Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)Bromodomain (PF00439)    DDT (PF02791)    PHD (PF00628)    WAC_Acf1_DNA_bd (PF10537)    WHIM1 (PF15612)    WHIM3 (PF15614)   
Domain families : Pfam (NCBI)pfam00439    pfam02791    pfam00628    pfam10537    pfam15612    pfam15614   
Domain families : Smart (EMBL)BROMO (SM00297)  DDT (SM00571)  PHD (SM00249)  RING (SM00184)  
Conserved Domain (NCBI)BAZ1A
DMDM Disease mutations11177
Blocks (Seattle)BAZ1A
SuperfamilyQ9NRL2
Human Protein AtlasENSG00000198604
Peptide AtlasQ9NRL2
IPIIPI00412415   IPI00383565   IPI01009695   IPI01025903   IPI01026458   IPI01026133   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRL2
IntAct (EBI)Q9NRL2
FunCoupENSG00000198604
BioGRIDBAZ1A
STRING (EMBL)BAZ1A
ZODIACBAZ1A
Ontologies - Pathways
QuickGOQ9NRL2
Ontology : AmiGOhistone acetyltransferase activity  protein binding  DNA-dependent DNA replication  chromatin remodeling  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  CHRAC  ACF complex  
Ontology : EGO-EBIhistone acetyltransferase activity  protein binding  DNA-dependent DNA replication  chromatin remodeling  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  CHRAC  ACF complex  
NDEx NetworkBAZ1A
Atlas of Cancer Signalling NetworkBAZ1A
Wikipedia pathwaysBAZ1A
Orthology - Evolution
OrthoDB11177
GeneTree (enSembl)ENSG00000198604
Phylogenetic Trees/Animal Genes : TreeFamBAZ1A
HOVERGENQ9NRL2
HOGENOMQ9NRL2
Homologs : HomoloGeneBAZ1A
Homology/Alignments : Family Browser (UCSC)BAZ1A
Gene fusions - Rearrangements
Fusion : MitelmanBAZ1A/NKX2-1 [14q13.1/14q13.3]  
Fusion : MitelmanBAZ1A/RNF115 [14q13.1/1q21.1]  [t(1;14)(q21;q13)]  
Fusion : MitelmanDOCK9/BAZ1A [13q32.3/14q13.1]  [t(13;14)(q32;q13)]  
Fusion : MitelmanZNF253/BAZ1A [19p13.11/14q13.1]  [t(14;19)(q13;p13)]  
Fusion: TCGABAZ1A 14q13.1 NKX2-1 14q13.3 LUAD
Fusion: TCGABAZ1A 14q13.1 RNF115 1q21.1 LUSC
Fusion: TCGAZNF253 19p13.11 BAZ1A 14q13.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBAZ1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BAZ1A
dbVarBAZ1A
ClinVarBAZ1A
1000_GenomesBAZ1A 
Exome Variant ServerBAZ1A
ExAC (Exome Aggregation Consortium)BAZ1A (select the gene name)
Genetic variants : HAPMAP11177
Genomic Variants (DGV)BAZ1A [DGVbeta]
DECIPHER (Syndromes)14:35221937-35344853  ENSG00000198604
CONAN: Copy Number AnalysisBAZ1A 
Mutations
ICGC Data PortalBAZ1A 
TCGA Data PortalBAZ1A 
Broad Tumor PortalBAZ1A
OASIS PortalBAZ1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBAZ1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBAZ1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BAZ1A
DgiDB (Drug Gene Interaction Database)BAZ1A
DoCM (Curated mutations)BAZ1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BAZ1A (select a term)
intoGenBAZ1A
Cancer3DBAZ1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605680   
Orphanet
MedgenBAZ1A
Genetic Testing Registry BAZ1A
NextProtQ9NRL2 [Medical]
TSGene11177
GENETestsBAZ1A
Huge Navigator BAZ1A [HugePedia]
snp3D : Map Gene to Disease11177
BioCentury BCIQBAZ1A
ClinGenBAZ1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11177
Chemical/Pharm GKB GenePA25270
Clinical trialBAZ1A
Miscellaneous
canSAR (ICR)BAZ1A (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBAZ1A
EVEXBAZ1A
GoPubMedBAZ1A
iHOPBAZ1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:57:20 CET 2017

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