Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BAZ1B (bromodomain adjacent to zinc finger domain 1B)

Identity

Alias_namesWBSCR9
WBSCR10
Alias_symbol (synonym)WSTF
Other alias
HGNC (Hugo) BAZ1B
LocusID (NCBI) 9031
Atlas_Id 51570
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 73440398 and ends at 73522285 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BAZ1B (7q11.23) / BAZ1B (7q11.23)BAZ1B (7q11.23) / FNIP2 (4q32.1)BAZ1B (7q11.23) / LOC100216546 ()
BAZ1B (7q11.23) / POMZP3 (7q11.23)BAZ1B (7q11.23) / ZP3 (7q11.23)ISY1-RAB43 (3q21.3) / BAZ1B (7q11.23)
BAZ1B 7q11.23 / POMZP3 7q11.23BAZ1B 7q11.23 / ZP3 7q11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BAZ1B   961
Cards
Entrez_Gene (NCBI)BAZ1B  9031  bromodomain adjacent to zinc finger domain 1B
AliasesWBSCR10; WBSCR9; WSTF
GeneCards (Weizmann)BAZ1B
Ensembl hg19 (Hinxton)ENSG00000009954 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000009954 [Gene_View]  chr7:73440398-73522285 [Contig_View]  BAZ1B [Vega]
ICGC DataPortalENSG00000009954
TCGA cBioPortalBAZ1B
AceView (NCBI)BAZ1B
Genatlas (Paris)BAZ1B
WikiGenes9031
SOURCE (Princeton)BAZ1B
Genetics Home Reference (NIH)BAZ1B
Genomic and cartography
GoldenPath hg38 (UCSC)BAZ1B  -     chr7:73440398-73522285 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BAZ1B  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblBAZ1B - 7q11.23 [CytoView hg19]  BAZ1B - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBIBAZ1B [Mapview hg19]  BAZ1B [Mapview hg38]
OMIM605681   
Gene and transcription
Genbank (Entrez)AB032253 AF072810 AF084479 AK123274 BC041561
RefSeq transcript (Entrez)NM_023005 NM_032408
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BAZ1B
Cluster EST : UnigeneHs.743372 [ NCBI ]
CGAP (NCI)Hs.743372
Alternative Splicing GalleryENSG00000009954
Gene ExpressionBAZ1B [ NCBI-GEO ]   BAZ1B [ EBI - ARRAY_EXPRESS ]   BAZ1B [ SEEK ]   BAZ1B [ MEM ]
Gene Expression Viewer (FireBrowse)BAZ1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9031
GTEX Portal (Tissue expression)BAZ1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UIG0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UIG0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UIG0
Splice isoforms : SwissVarQ9UIG0
Catalytic activity : Enzyme2.7.10.2 [ Enzyme-Expasy ]   2.7.10.22.7.10.2 [ IntEnz-EBI ]   2.7.10.2 [ BRENDA ]   2.7.10.2 [ KEGG ]   
PhosPhoSitePlusQ9UIG0
Domaine pattern : Prosite (Expaxy)BROMODOMAIN_1 (PS00633)    BROMODOMAIN_2 (PS50014)    DDT (PS50827)    WAC (PS51136)    ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Bromodomain    Bromodomain_CS    DDT_dom    WHIM1_dom    WHIM2_dom    WSTF_Acf1_Cbp146    Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)Bromodomain (PF00439)    PHD (PF00628)    WAC_Acf1_DNA_bd (PF10537)    WHIM1 (PF15612)    WSD (PF15613)   
Domain families : Pfam (NCBI)pfam00439    pfam00628    pfam10537    pfam15612    pfam15613   
Domain families : Smart (EMBL)BROMO (SM00297)  DDT (SM00571)  PHD (SM00249)  
Conserved Domain (NCBI)BAZ1B
DMDM Disease mutations9031
Blocks (Seattle)BAZ1B
PDB (SRS)1F62   
PDB (PDBSum)1F62   
PDB (IMB)1F62   
PDB (RSDB)1F62   
Structural Biology KnowledgeBase1F62   
SCOP (Structural Classification of Proteins)1F62   
CATH (Classification of proteins structures)1F62   
SuperfamilyQ9UIG0
Human Protein AtlasENSG00000009954
Peptide AtlasQ9UIG0
HPRD10416
IPIIPI00069817   IPI00216695   
Protein Interaction databases
DIP (DOE-UCLA)Q9UIG0
IntAct (EBI)Q9UIG0
FunCoupENSG00000009954
BioGRIDBAZ1B
STRING (EMBL)BAZ1B
ZODIACBAZ1B
Ontologies - Pathways
QuickGOQ9UIG0
Ontology : AmiGOcondensed chromosome  heart morphogenesis  chromatin binding  protein tyrosine kinase activity  non-membrane spanning protein tyrosine kinase activity  protein binding  ATP binding  nucleoplasm  pericentric heterochromatin  double-strand break repair  chromatin assembly or disassembly  transcription, DNA-templated  regulation of transcription, DNA-templated  cellular response to DNA damage stimulus  zinc ion binding  histone phosphorylation  nuclear body  peptidyl-tyrosine phosphorylation  histone kinase activity  nuclear replication fork  positive regulation of gene expression, epigenetic  chromatin-mediated maintenance of transcription  lysine-acetylated histone binding  vitamin D receptor activator activity  positive regulation of receptor activity  
Ontology : EGO-EBIcondensed chromosome  heart morphogenesis  chromatin binding  protein tyrosine kinase activity  non-membrane spanning protein tyrosine kinase activity  protein binding  ATP binding  nucleoplasm  pericentric heterochromatin  double-strand break repair  chromatin assembly or disassembly  transcription, DNA-templated  regulation of transcription, DNA-templated  cellular response to DNA damage stimulus  zinc ion binding  histone phosphorylation  nuclear body  peptidyl-tyrosine phosphorylation  histone kinase activity  nuclear replication fork  positive regulation of gene expression, epigenetic  chromatin-mediated maintenance of transcription  lysine-acetylated histone binding  vitamin D receptor activator activity  positive regulation of receptor activity  
Pathways : BIOCARTAControl of Gene Expression by Vitamin D Receptor [Genes]   
NDEx NetworkBAZ1B
Atlas of Cancer Signalling NetworkBAZ1B
Wikipedia pathwaysBAZ1B
Orthology - Evolution
OrthoDB9031
GeneTree (enSembl)ENSG00000009954
Phylogenetic Trees/Animal Genes : TreeFamBAZ1B
HOVERGENQ9UIG0
HOGENOMQ9UIG0
Homologs : HomoloGeneBAZ1B
Homology/Alignments : Family Browser (UCSC)BAZ1B
Gene fusions - Rearrangements
Fusion : MitelmanBAZ1B/POMZP3 [7q11.23/7q11.23]  
Fusion : MitelmanBAZ1B/ZP3 [7q11.23/7q11.23]  [t(7;7)(q11;q11)]  
Fusion: TCGABAZ1B 7q11.23 POMZP3 7q11.23 PRAD
Fusion: TCGABAZ1B 7q11.23 ZP3 7q11.23 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBAZ1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BAZ1B
dbVarBAZ1B
ClinVarBAZ1B
1000_GenomesBAZ1B 
Exome Variant ServerBAZ1B
ExAC (Exome Aggregation Consortium)BAZ1B (select the gene name)
Genetic variants : HAPMAP9031
Genomic Variants (DGV)BAZ1B [DGVbeta]
DECIPHERBAZ1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBAZ1B 
Mutations
ICGC Data PortalBAZ1B 
TCGA Data PortalBAZ1B 
Broad Tumor PortalBAZ1B
OASIS PortalBAZ1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBAZ1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBAZ1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BAZ1B
DgiDB (Drug Gene Interaction Database)BAZ1B
DoCM (Curated mutations)BAZ1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BAZ1B (select a term)
intoGenBAZ1B
Cancer3DBAZ1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605681   
Orphanet145   
MedgenBAZ1B
Genetic Testing Registry BAZ1B
NextProtQ9UIG0 [Medical]
TSGene9031
GENETestsBAZ1B
Target ValidationBAZ1B
Huge Navigator BAZ1B [HugePedia]
snp3D : Map Gene to Disease9031
BioCentury BCIQBAZ1B
ClinGenBAZ1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9031
Chemical/Pharm GKB GenePA25271
Clinical trialBAZ1B
Miscellaneous
canSAR (ICR)BAZ1B (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBAZ1B
EVEXBAZ1B
GoPubMedBAZ1B
iHOPBAZ1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 18:58:59 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.