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BAZ2B (bromodomain adjacent to zinc finger domain 2B)

Identity

Alias_symbol (synonym)WALp4
Other alias
HGNC (Hugo) BAZ2B
LocusID (NCBI) 29994
Atlas_Id 758
Location 2q24.2  [Link to chromosome band 2q24]
Location_base_pair Starts at 159318979 and ends at 159616601 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BAZ2B (2q24.2) / DMTF1 (7q21.12)BAZ2B (2q24.2) / FAP (2q24.2)BAZ2B (2q24.2) / LRRC7 (1p31.1)
BAZ2B (2q24.2) / PRKAA1 (5p13.1)C3orf52 (3q13.2) / BAZ2B (2q24.2)LAPTM4A (2p24.1) / BAZ2B (2q24.2)
NBAS (2p24.3) / BAZ2B (2q24.2)TNFAIP8L1 (19p13.3) / BAZ2B (2q24.2)WDSUB1 (2q24.2) / BAZ2B (2q24.2)
WDSUB1 2q24.2 / BAZ2B 2q24.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BAZ2B   963
Cards
Entrez_Gene (NCBI)BAZ2B  29994  bromodomain adjacent to zinc finger domain 2B
AliasesWALp4
GeneCards (Weizmann)BAZ2B
Ensembl hg19 (Hinxton)ENSG00000123636 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123636 [Gene_View]  chr2:159318979-159616601 [Contig_View]  BAZ2B [Vega]
ICGC DataPortalENSG00000123636
TCGA cBioPortalBAZ2B
AceView (NCBI)BAZ2B
Genatlas (Paris)BAZ2B
WikiGenes29994
SOURCE (Princeton)BAZ2B
Genetics Home Reference (NIH)BAZ2B
Genomic and cartography
GoldenPath hg38 (UCSC)BAZ2B  -     chr2:159318979-159616601 -  2q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BAZ2B  -     2q24.2   [Description]    (hg19-Feb_2009)
EnsemblBAZ2B - 2q24.2 [CytoView hg19]  BAZ2B - 2q24.2 [CytoView hg38]
Mapping of homologs : NCBIBAZ2B [Mapview hg19]  BAZ2B [Mapview hg38]
OMIM605683   
Gene and transcription
Genbank (Entrez)AB032255 AB040909 AK000386 AK023566 AK027612
RefSeq transcript (Entrez)NM_001289975 NM_001329857 NM_001329858 NM_013450
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BAZ2B
Cluster EST : UnigeneHs.731786 [ NCBI ]
CGAP (NCI)Hs.731786
Alternative Splicing GalleryENSG00000123636
Gene ExpressionBAZ2B [ NCBI-GEO ]   BAZ2B [ EBI - ARRAY_EXPRESS ]   BAZ2B [ SEEK ]   BAZ2B [ MEM ]
Gene Expression Viewer (FireBrowse)BAZ2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29994
GTEX Portal (Tissue expression)BAZ2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UIF8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UIF8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UIF8
Splice isoforms : SwissVarQ9UIF8
PhosPhoSitePlusQ9UIF8
Domaine pattern : Prosite (Expaxy)BROMODOMAIN_1 (PS00633)    BROMODOMAIN_2 (PS50014)    DDT (PS50827)    MBD (PS50982)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Bromodomain    Bromodomain_CS    DDT_dom    DNA-bd_dom    Methyl_CpG_DNA-bd    WHIM2_dom    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)Bromodomain (PF00439)    DDT (PF02791)    MBD (PF01429)    PHD (PF00628)    WSD (PF15613)   
Domain families : Pfam (NCBI)pfam00439    pfam02791    pfam01429    pfam00628    pfam15613   
Domain families : Smart (EMBL)BROMO (SM00297)  DDT (SM00571)  MBD (SM00391)  PHD (SM00249)  
Conserved Domain (NCBI)BAZ2B
DMDM Disease mutations29994
Blocks (Seattle)BAZ2B
PDB (SRS)###############################################################################################################################################################################################################################################################   
PDB (PDBSum)###############################################################################################################################################################################################################################################################   
PDB (IMB)###############################################################################################################################################################################################################################################################   
PDB (RSDB)###############################################################################################################################################################################################################################################################   
Structural Biology KnowledgeBase###############################################################################################################################################################################################################################################################   
SCOP (Structural Classification of Proteins)###############################################################################################################################################################################################################################################################   
CATH (Classification of proteins structures)###############################################################################################################################################################################################################################################################   
SuperfamilyQ9UIF8
Human Protein AtlasENSG00000123636
Peptide AtlasQ9UIF8
HPRD09295
IPIIPI00873703   IPI00061354   IPI00220295   IPI00929198   IPI00916292   IPI01021362   IPI00917735   IPI00926311   
Protein Interaction databases
DIP (DOE-UCLA)Q9UIF8
IntAct (EBI)Q9UIF8
FunCoupENSG00000123636
BioGRIDBAZ2B
STRING (EMBL)BAZ2B
ZODIACBAZ2B
Ontologies - Pathways
QuickGOQ9UIF8
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
NDEx NetworkBAZ2B
Atlas of Cancer Signalling NetworkBAZ2B
Wikipedia pathwaysBAZ2B
Orthology - Evolution
OrthoDB29994
GeneTree (enSembl)ENSG00000123636
Phylogenetic Trees/Animal Genes : TreeFamBAZ2B
HOVERGENQ9UIF8
HOGENOMQ9UIF8
Homologs : HomoloGeneBAZ2B
Homology/Alignments : Family Browser (UCSC)BAZ2B
Gene fusions - Rearrangements
Fusion : MitelmanNBAS/BAZ2B [2p24.3/2q24.2]  [t(2;2)(p24;q24)]  
Fusion : MitelmanWDSUB1/BAZ2B [2q24.2/2q24.2]  [t(2;2)(q24;q24)]  
Fusion: TCGAWDSUB1 2q24.2 BAZ2B 2q24.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBAZ2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BAZ2B
dbVarBAZ2B
ClinVarBAZ2B
1000_GenomesBAZ2B 
Exome Variant ServerBAZ2B
ExAC (Exome Aggregation Consortium)BAZ2B (select the gene name)
Genetic variants : HAPMAP29994
Genomic Variants (DGV)BAZ2B [DGVbeta]
DECIPHERBAZ2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBAZ2B 
Mutations
ICGC Data PortalBAZ2B 
TCGA Data PortalBAZ2B 
Broad Tumor PortalBAZ2B
OASIS PortalBAZ2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBAZ2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBAZ2B
intOGen PortalBAZ2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BAZ2B
DgiDB (Drug Gene Interaction Database)BAZ2B
DoCM (Curated mutations)BAZ2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BAZ2B (select a term)
intoGenBAZ2B
Cancer3DBAZ2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605683   
Orphanet
MedgenBAZ2B
Genetic Testing Registry BAZ2B
NextProtQ9UIF8 [Medical]
TSGene29994
GENETestsBAZ2B
Target ValidationBAZ2B
Huge Navigator BAZ2B [HugePedia]
snp3D : Map Gene to Disease29994
BioCentury BCIQBAZ2B
ClinGenBAZ2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29994
Chemical/Pharm GKB GenePA25273
Clinical trialBAZ2B
Miscellaneous
canSAR (ICR)BAZ2B (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBAZ2B
EVEXBAZ2B
GoPubMedBAZ2B
iHOPBAZ2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:47:48 CEST 2017

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