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BBIP1 (BBSome interacting protein 1)

Identity

Alias_namesNCRNA00081
non-protein coding RNA 81
Alias_symbol (synonym)bA348N5.3
BBIP10
BBS18
Other alias
HGNC (Hugo) BBIP1
LocusID (NCBI) 92482
Atlas_Id 60711
Location 10q25.2  [Link to chromosome band 10q25]
Location_base_pair Starts at 110898730 and ends at 110919366 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BBIP1   28093
Cards
Entrez_Gene (NCBI)BBIP1  92482  BBSome interacting protein 1
AliasesBBIP10; BBS18; NCRNA00081; bA348N5.3
GeneCards (Weizmann)BBIP1
Ensembl hg19 (Hinxton)ENSG00000214413 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214413 [Gene_View]  chr10:110898730-110919366 [Contig_View]  BBIP1 [Vega]
ICGC DataPortalENSG00000214413
TCGA cBioPortalBBIP1
AceView (NCBI)BBIP1
Genatlas (Paris)BBIP1
WikiGenes92482
SOURCE (Princeton)BBIP1
Genetics Home Reference (NIH)BBIP1
Genomic and cartography
GoldenPath hg38 (UCSC)BBIP1  -     chr10:110898730-110919366 -  10q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BBIP1  -     10q25.2   [Description]    (hg19-Feb_2009)
EnsemblBBIP1 - 10q25.2 [CytoView hg19]  BBIP1 - 10q25.2 [CytoView hg38]
Mapping of homologs : NCBIBBIP1 [Mapview hg19]  BBIP1 [Mapview hg38]
OMIM613605   615995   
Gene and transcription
Genbank (Entrez)AK021501 AK025724 AK125829 AK307126 AK307314
RefSeq transcript (Entrez)NM_001195304 NM_001195305 NM_001195306 NM_001195307 NM_001243783
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BBIP1
Cluster EST : UnigeneHs.651480 [ NCBI ]
CGAP (NCI)Hs.651480
Alternative Splicing GalleryENSG00000214413
Gene ExpressionBBIP1 [ NCBI-GEO ]   BBIP1 [ EBI - ARRAY_EXPRESS ]   BBIP1 [ SEEK ]   BBIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)BBIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92482
GTEX Portal (Tissue expression)BBIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MTZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MTZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MTZ0
Splice isoforms : SwissVarA8MTZ0
PhosPhoSitePlusA8MTZ0
Domains : Interpro (EBI)BBIP10   
Domain families : Pfam (Sanger)BBIP10 (PF14777)   
Domain families : Pfam (NCBI)pfam14777   
Conserved Domain (NCBI)BBIP1
DMDM Disease mutations92482
Blocks (Seattle)BBIP1
SuperfamilyA8MTZ0
Human Protein AtlasENSG00000214413
Peptide AtlasA8MTZ0
IPIIPI00847845   IPI00976703   IPI00980383   IPI00976446   IPI00979718   
Protein Interaction databases
DIP (DOE-UCLA)A8MTZ0
IntAct (EBI)A8MTZ0
FunCoupENSG00000214413
BioGRIDBBIP1
STRING (EMBL)BBIP1
ZODIACBBIP1
Ontologies - Pathways
QuickGOA8MTZ0
Ontology : AmiGOprotein binding  cytoplasm  cytosol  protein transport  BBSome  cilium assembly  receptor localization to non-motile cilium  
Ontology : EGO-EBIprotein binding  cytoplasm  cytosol  protein transport  BBSome  cilium assembly  receptor localization to non-motile cilium  
NDEx NetworkBBIP1
Atlas of Cancer Signalling NetworkBBIP1
Wikipedia pathwaysBBIP1
Orthology - Evolution
OrthoDB92482
GeneTree (enSembl)ENSG00000214413
Phylogenetic Trees/Animal Genes : TreeFamBBIP1
HOVERGENA8MTZ0
HOGENOMA8MTZ0
Homologs : HomoloGeneBBIP1
Homology/Alignments : Family Browser (UCSC)BBIP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBBIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BBIP1
dbVarBBIP1
ClinVarBBIP1
1000_GenomesBBIP1 
Exome Variant ServerBBIP1
ExAC (Exome Aggregation Consortium)BBIP1 (select the gene name)
Genetic variants : HAPMAP92482
Genomic Variants (DGV)BBIP1 [DGVbeta]
DECIPHERBBIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBBIP1 
Mutations
ICGC Data PortalBBIP1 
TCGA Data PortalBBIP1 
Broad Tumor PortalBBIP1
OASIS PortalBBIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBBIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBBIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)EURO-WABB PROJECT OPEN VARIATION DATABASE
BioMutasearch BBIP1
DgiDB (Drug Gene Interaction Database)BBIP1
DoCM (Curated mutations)BBIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BBIP1 (select a term)
intoGenBBIP1
Cancer3DBBIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613605    615995   
Orphanet3244   
MedgenBBIP1
Genetic Testing Registry BBIP1
NextProtA8MTZ0 [Medical]
TSGene92482
GENETestsBBIP1
Target ValidationBBIP1
Huge Navigator BBIP1 [HugePedia]
snp3D : Map Gene to Disease92482
BioCentury BCIQBBIP1
ClinGenBBIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92482
Chemical/Pharm GKB GenePA164723577
Clinical trialBBIP1
Miscellaneous
canSAR (ICR)BBIP1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBBIP1
EVEXBBIP1
GoPubMedBBIP1
iHOPBBIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:13 CEST 2017

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