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BBOF1 (basal body orientation factor 1)

Identity

Alias_namesC14orf45
CCDC176
chromosome 14 open reading frame 45
coiled-coil domain containing 176
Other alias
HGNC (Hugo) BBOF1
LocusID (NCBI) 80127
Atlas_Id 77809
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 74019356 and ends at 74066092 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BBOF1 (14q24.3) / RGS6 (14q24.2)LIN52 (14q24.3) / BBOF1 (14q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BBOF1   19855
Cards
Entrez_Gene (NCBI)BBOF1  80127  basal body orientation factor 1
AliasesC14orf45; CCDC176
GeneCards (Weizmann)BBOF1
Ensembl hg19 (Hinxton)ENSG00000119636 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119636 [Gene_View]  chr14:74019356-74066092 [Contig_View]  BBOF1 [Vega]
ICGC DataPortalENSG00000119636
TCGA cBioPortalBBOF1
AceView (NCBI)BBOF1
Genatlas (Paris)BBOF1
WikiGenes80127
SOURCE (Princeton)BBOF1
Genetics Home Reference (NIH)BBOF1
Genomic and cartography
GoldenPath hg38 (UCSC)BBOF1  -     chr14:74019356-74066092 +  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BBOF1  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblBBOF1 - 14q24.3 [CytoView hg19]  BBOF1 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIBBOF1 [Mapview hg19]  BBOF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026842 AK097531 AL834487 BC044808 BC104979
RefSeq transcript (Entrez)NM_025057
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BBOF1
Cluster EST : UnigeneHs.644621 [ NCBI ]
CGAP (NCI)Hs.644621
Alternative Splicing GalleryENSG00000119636
Gene ExpressionBBOF1 [ NCBI-GEO ]   BBOF1 [ EBI - ARRAY_EXPRESS ]   BBOF1 [ SEEK ]   BBOF1 [ MEM ]
Gene Expression Viewer (FireBrowse)BBOF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80127
GTEX Portal (Tissue expression)BBOF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8ND07   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8ND07  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8ND07
Splice isoforms : SwissVarQ8ND07
PhosPhoSitePlusQ8ND07
Domains : Interpro (EBI)Bbof1    DUF4515   
Domain families : Pfam (Sanger)DUF4515 (PF14988)   
Domain families : Pfam (NCBI)pfam14988   
Conserved Domain (NCBI)BBOF1
DMDM Disease mutations80127
Blocks (Seattle)BBOF1
SuperfamilyQ8ND07
Human Protein AtlasENSG00000119636
Peptide AtlasQ8ND07
HPRD12650
IPIIPI00171500   IPI01026556   IPI01026588   IPI01026214   
Protein Interaction databases
DIP (DOE-UCLA)Q8ND07
IntAct (EBI)Q8ND07
FunCoupENSG00000119636
BioGRIDBBOF1
STRING (EMBL)BBOF1
ZODIACBBOF1
Ontologies - Pathways
QuickGOQ8ND07
Ontology : AmiGOcytoplasm  ciliary basal body  motile cilium assembly  
Ontology : EGO-EBIcytoplasm  ciliary basal body  motile cilium assembly  
NDEx NetworkBBOF1
Atlas of Cancer Signalling NetworkBBOF1
Wikipedia pathwaysBBOF1
Orthology - Evolution
OrthoDB80127
GeneTree (enSembl)ENSG00000119636
Phylogenetic Trees/Animal Genes : TreeFamBBOF1
HOVERGENQ8ND07
HOGENOMQ8ND07
Homologs : HomoloGeneBBOF1
Homology/Alignments : Family Browser (UCSC)BBOF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBBOF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BBOF1
dbVarBBOF1
ClinVarBBOF1
1000_GenomesBBOF1 
Exome Variant ServerBBOF1
ExAC (Exome Aggregation Consortium)BBOF1 (select the gene name)
Genetic variants : HAPMAP80127
Genomic Variants (DGV)BBOF1 [DGVbeta]
DECIPHERBBOF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBBOF1 
Mutations
ICGC Data PortalBBOF1 
TCGA Data PortalBBOF1 
Broad Tumor PortalBBOF1
OASIS PortalBBOF1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBBOF1
BioMutasearch BBOF1
DgiDB (Drug Gene Interaction Database)BBOF1
DoCM (Curated mutations)BBOF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BBOF1 (select a term)
intoGenBBOF1
Cancer3DBBOF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBBOF1
Genetic Testing Registry BBOF1
NextProtQ8ND07 [Medical]
TSGene80127
GENETestsBBOF1
Target ValidationBBOF1
Huge Navigator BBOF1 [HugePedia]
snp3D : Map Gene to Disease80127
BioCentury BCIQBBOF1
ClinGenBBOF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80127
Chemical/Pharm GKB GenePA134886442
Clinical trialBBOF1
Miscellaneous
canSAR (ICR)BBOF1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBBOF1
EVEXBBOF1
GoPubMedBBOF1
iHOPBBOF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:13 CEST 2017

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