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BCAN (brevican)

Identity

Alias_symbol (synonym)BEHAB
MGC13038
CSPG7
Other alias
HGNC (Hugo) BCAN
LocusID (NCBI) 63827
Atlas_Id 53253
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 156641948 and ends at 156659532 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABCC3 (17q21.33) / BCAN (1q23.1)BCAN (1q23.1) / NTRK1 (1q23.1)ABCC3 17q21.33 / BCAN 1q23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BCAN   23059
Cards
Entrez_Gene (NCBI)BCAN  63827  brevican
AliasesBEHAB; CSPG7
GeneCards (Weizmann)BCAN
Ensembl hg19 (Hinxton)ENSG00000132692 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132692 [Gene_View]  chr1:156641948-156659532 [Contig_View]  BCAN [Vega]
ICGC DataPortalENSG00000132692
TCGA cBioPortalBCAN
AceView (NCBI)BCAN
Genatlas (Paris)BCAN
WikiGenes63827
SOURCE (Princeton)BCAN
Genetics Home Reference (NIH)BCAN
Genomic and cartography
GoldenPath hg38 (UCSC)BCAN  -     chr1:156641948-156659532 +  1q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BCAN  -     1q23.1   [Description]    (hg19-Feb_2009)
EnsemblBCAN - 1q23.1 [CytoView hg19]  BCAN - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBIBCAN [Mapview hg19]  BCAN [Mapview hg38]
OMIM600347   
Gene and transcription
Genbank (Entrez)AB209570 AF228710 AF229053 AK126588 AK289759
RefSeq transcript (Entrez)NM_021948 NM_198427
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BCAN
Cluster EST : UnigeneHs.516904 [ NCBI ]
CGAP (NCI)Hs.516904
Alternative Splicing GalleryENSG00000132692
Gene ExpressionBCAN [ NCBI-GEO ]   BCAN [ EBI - ARRAY_EXPRESS ]   BCAN [ SEEK ]   BCAN [ MEM ]
Gene Expression Viewer (FireBrowse)BCAN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63827
GTEX Portal (Tissue expression)BCAN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GW7
Splice isoforms : SwissVarQ96GW7
PhosPhoSitePlusQ96GW7
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    IG_LIKE (PS50835)    IG_MHC (PS00290)    LINK_1 (PS01241)    LINK_2 (PS50963)    SUSHI (PS50923)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    C-type_lectin_CS    CTDL_fold    EGF-like_CS    EGF-like_dom    Ig-like_dom    Ig-like_fold    Ig/MHC_CS    Ig_sub    Ig_V-set    Link_dom    Sushi_SCR_CCP_dom   
Domain families : Pfam (Sanger)EGF (PF00008)    Lectin_C (PF00059)    Sushi (PF00084)    V-set (PF07686)    Xlink (PF00193)   
Domain families : Pfam (NCBI)pfam00008    pfam00059    pfam00084    pfam07686    pfam00193   
Domain families : Smart (EMBL)CCP (SM00032)  CLECT (SM00034)  EGF (SM00181)  IG (SM00409)  IGv (SM00406)  LINK (SM00445)  
Conserved Domain (NCBI)BCAN
DMDM Disease mutations63827
Blocks (Seattle)BCAN
SuperfamilyQ96GW7
Human Protein AtlasENSG00000132692
Peptide AtlasQ96GW7
HPRD02644
IPIIPI00456623   IPI00456624   IPI00217423   IPI00747933   IPI00513878   IPI00647472   
Protein Interaction databases
DIP (DOE-UCLA)Q96GW7
IntAct (EBI)Q96GW7
FunCoupENSG00000132692
BioGRIDBCAN
STRING (EMBL)BCAN
ZODIACBCAN
Ontologies - Pathways
QuickGOQ96GW7
Ontology : AmiGOskeletal system development  extracellular matrix structural constituent  hyaluronic acid binding  extracellular region  proteinaceous extracellular matrix  Golgi lumen  cell adhesion  central nervous system development  hippocampus development  extracellular matrix disassembly  extracellular matrix organization  glycosaminoglycan metabolic process  chondroitin sulfate biosynthetic process  chondroitin sulfate catabolic process  dermatan sulfate biosynthetic process  carbohydrate binding  anchored component of membrane  lysosomal lumen  
Ontology : EGO-EBIskeletal system development  extracellular matrix structural constituent  hyaluronic acid binding  extracellular region  proteinaceous extracellular matrix  Golgi lumen  cell adhesion  central nervous system development  hippocampus development  extracellular matrix disassembly  extracellular matrix organization  glycosaminoglycan metabolic process  chondroitin sulfate biosynthetic process  chondroitin sulfate catabolic process  dermatan sulfate biosynthetic process  carbohydrate binding  anchored component of membrane  lysosomal lumen  
NDEx NetworkBCAN
Atlas of Cancer Signalling NetworkBCAN
Wikipedia pathwaysBCAN
Orthology - Evolution
OrthoDB63827
GeneTree (enSembl)ENSG00000132692
Phylogenetic Trees/Animal Genes : TreeFamBCAN
HOVERGENQ96GW7
HOGENOMQ96GW7
Homologs : HomoloGeneBCAN
Homology/Alignments : Family Browser (UCSC)BCAN
Gene fusions - Rearrangements
Fusion : MitelmanABCC3/BCAN [17q21.33/1q23.1]  [t(1;17)(q23;q21)]  
Fusion : MitelmanBCAN/NTRK1 [1q23.1/1q23.1]  [t(1;1)(q23;q23)]  
Fusion: TCGAABCC3 17q21.33 BCAN 1q23.1 KIRC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBCAN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BCAN
dbVarBCAN
ClinVarBCAN
1000_GenomesBCAN 
Exome Variant ServerBCAN
ExAC (Exome Aggregation Consortium)BCAN (select the gene name)
Genetic variants : HAPMAP63827
Genomic Variants (DGV)BCAN [DGVbeta]
DECIPHERBCAN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBCAN 
Mutations
ICGC Data PortalBCAN 
TCGA Data PortalBCAN 
Broad Tumor PortalBCAN
OASIS PortalBCAN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBCAN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBCAN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BCAN
DgiDB (Drug Gene Interaction Database)BCAN
DoCM (Curated mutations)BCAN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BCAN (select a term)
intoGenBCAN
Cancer3DBCAN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600347   
Orphanet
MedgenBCAN
Genetic Testing Registry BCAN
NextProtQ96GW7 [Medical]
TSGene63827
GENETestsBCAN
Target ValidationBCAN
Huge Navigator BCAN [HugePedia]
snp3D : Map Gene to Disease63827
BioCentury BCIQBCAN
ClinGenBCAN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63827
Chemical/Pharm GKB GenePA134868393
Clinical trialBCAN
Miscellaneous
canSAR (ICR)BCAN (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBCAN
EVEXBCAN
GoPubMedBCAN
iHOPBCAN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:47:48 CEST 2017

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