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BCAP29 (B-cell receptor associated protein 29)

Identity

Alias_namesB-cell receptor-associated protein 29
Alias_symbol (synonym)BAP29
DKFZp686M2086
Other alias
HGNC (Hugo) BCAP29
LocusID (NCBI) 55973
Atlas_Id 54150
Location 7q22.3  [Link to chromosome band 7q22]
Location_base_pair Starts at 107580759 and ends at 107623317 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DUS4L (7q22.3) / BCAP29 (7q22.3)TOMM40 (19q13.32) / BCAP29 (7q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BCAP29   24131
Cards
Entrez_Gene (NCBI)BCAP29  55973  B-cell receptor associated protein 29
AliasesBAP29
GeneCards (Weizmann)BCAP29
Ensembl hg19 (Hinxton)ENSG00000075790 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000075790 [Gene_View]  chr7:107580759-107623317 [Contig_View]  BCAP29 [Vega]
ICGC DataPortalENSG00000075790
TCGA cBioPortalBCAP29
AceView (NCBI)BCAP29
Genatlas (Paris)BCAP29
WikiGenes55973
SOURCE (Princeton)BCAP29
Genetics Home Reference (NIH)BCAP29
Genomic and cartography
GoldenPath hg38 (UCSC)BCAP29  -     chr7:107580759-107623317 +  7q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BCAP29  -     7q22.3   [Description]    (hg19-Feb_2009)
EnsemblBCAP29 - 7q22.3 [CytoView hg19]  BCAP29 - 7q22.3 [CytoView hg38]
Mapping of homologs : NCBIBCAP29 [Mapview hg19]  BCAP29 [Mapview hg38]
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_001008405 NM_001008406 NM_001008407 NM_018844
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BCAP29
Cluster EST : UnigeneHs.303787 [ NCBI ]
CGAP (NCI)Hs.303787
Alternative Splicing GalleryENSG00000075790
Gene ExpressionBCAP29 [ NCBI-GEO ]   BCAP29 [ EBI - ARRAY_EXPRESS ]   BCAP29 [ SEEK ]   BCAP29 [ MEM ]
Gene Expression Viewer (FireBrowse)BCAP29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55973
GTEX Portal (Tissue expression)BCAP29
Human Protein AtlasENSG00000075790-BCAP29 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHQ4
Splice isoforms : SwissVarQ9UHQ4
PhosPhoSitePlusQ9UHQ4
Domains : Interpro (EBI)BAP29/BAP31   
Domain families : Pfam (Sanger)Bap31 (PF05529)   
Domain families : Pfam (NCBI)pfam05529   
Conserved Domain (NCBI)BCAP29
DMDM Disease mutations55973
Blocks (Seattle)BCAP29
PDB (SRS)4W7Y    4W7Z    4W80   
PDB (PDBSum)4W7Y    4W7Z    4W80   
PDB (IMB)4W7Y    4W7Z    4W80   
PDB (RSDB)4W7Y    4W7Z    4W80   
Structural Biology KnowledgeBase4W7Y    4W7Z    4W80   
SCOP (Structural Classification of Proteins)4W7Y    4W7Z    4W80   
CATH (Classification of proteins structures)4W7Y    4W7Z    4W80   
SuperfamilyQ9UHQ4
Human Protein Atlas [tissue]ENSG00000075790-BCAP29 [tissue]
Peptide AtlasQ9UHQ4
HPRD16541
IPIIPI00221233   IPI00921851   IPI00926856   IPI00927085   IPI00927314   IPI00514611   IPI00944935   IPI00514847   IPI01010452   IPI01009983   IPI00946945   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHQ4
IntAct (EBI)Q9UHQ4
FunCoupENSG00000075790
BioGRIDBCAP29
STRING (EMBL)BCAP29
ZODIACBCAP29
Ontologies - Pathways
QuickGOQ9UHQ4
Ontology : AmiGOosteoblast differentiation  endoplasmic reticulum membrane  intracellular protein transport  ER to Golgi vesicle-mediated transport  apoptotic process  membrane  integral component of membrane  protein localization to endoplasmic reticulum exit site  
Ontology : EGO-EBIosteoblast differentiation  endoplasmic reticulum membrane  intracellular protein transport  ER to Golgi vesicle-mediated transport  apoptotic process  membrane  integral component of membrane  protein localization to endoplasmic reticulum exit site  
NDEx NetworkBCAP29
Atlas of Cancer Signalling NetworkBCAP29
Wikipedia pathwaysBCAP29
Orthology - Evolution
OrthoDB55973
GeneTree (enSembl)ENSG00000075790
Phylogenetic Trees/Animal Genes : TreeFamBCAP29
HOVERGENQ9UHQ4
HOGENOMQ9UHQ4
Homologs : HomoloGeneBCAP29
Homology/Alignments : Family Browser (UCSC)BCAP29
Gene fusions - Rearrangements
Fusion : MitelmanDUS4L/BCAP29 [7q22.3/7q22.3]  [t(7;7)(q22;q22)]  
Tumor Fusion PortalBCAP29
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBCAP29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BCAP29
dbVarBCAP29
ClinVarBCAP29
1000_GenomesBCAP29 
Exome Variant ServerBCAP29
ExAC (Exome Aggregation Consortium)ENSG00000075790
GNOMAD BrowserENSG00000075790
Genetic variants : HAPMAP55973
Genomic Variants (DGV)BCAP29 [DGVbeta]
DECIPHERBCAP29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBCAP29 
Mutations
ICGC Data PortalBCAP29 
TCGA Data PortalBCAP29 
Broad Tumor PortalBCAP29
OASIS PortalBCAP29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBCAP29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBCAP29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BCAP29
DgiDB (Drug Gene Interaction Database)BCAP29
DoCM (Curated mutations)BCAP29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BCAP29 (select a term)
intoGenBCAP29
Cancer3DBCAP29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETBCAP29
MedgenBCAP29
Genetic Testing Registry BCAP29
NextProtQ9UHQ4 [Medical]
TSGene55973
GENETestsBCAP29
Target ValidationBCAP29
Huge Navigator BCAP29 [HugePedia]
snp3D : Map Gene to Disease55973
BioCentury BCIQBCAP29
ClinGenBCAP29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55973
Chemical/Pharm GKB GenePA134939094
Clinical trialBCAP29
Miscellaneous
canSAR (ICR)BCAP29 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBCAP29
EVEXBCAP29
GoPubMedBCAP29
iHOPBCAP29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:04:36 CET 2017

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