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BCAS1 (breast carcinoma amplified sequence 1)

Identity

Alias_symbol (synonym)NABC1
AIBC1
Other alias
HGNC (Hugo) BCAS1
LocusID (NCBI) 8537
Atlas_Id 764
Location 20q13.2  [Link to chromosome band 20q13]
Location_base_pair Starts at 53943538 and ends at 54070765 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BCAS1 (20q13.2) / BCAS1 (20q13.2)GFOD1 (6p24.1) / BCAS1 (20q13.2)NTNG1 (1p13.3) / BCAS1 (20q13.2)
RARG (12q13.13) / BCAS1 (20q13.2)SLC12A8 (3q21.2) / BCAS1 (20q13.2)GFOD1 6p24.1 / BCAS1 20q13.2
RARG 12q13.13 / BCAS1 20q13.2SLC12A8 3q21.2 / BCAS1 20q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)BCAS1   974
Cards
Entrez_Gene (NCBI)BCAS1  8537  breast carcinoma amplified sequence 1
AliasesAIBC1; NABC1
GeneCards (Weizmann)BCAS1
Ensembl hg19 (Hinxton)ENSG00000064787 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000064787 [Gene_View]  chr20:53943538-54070765 [Contig_View]  BCAS1 [Vega]
ICGC DataPortalENSG00000064787
TCGA cBioPortalBCAS1
AceView (NCBI)BCAS1
Genatlas (Paris)BCAS1
WikiGenes8537
SOURCE (Princeton)BCAS1
Genetics Home Reference (NIH)BCAS1
Genomic and cartography
GoldenPath hg38 (UCSC)BCAS1  -     chr20:53943538-54070765 -  20q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BCAS1  -     20q13.2   [Description]    (hg19-Feb_2009)
EnsemblBCAS1 - 20q13.2 [CytoView hg19]  BCAS1 - 20q13.2 [CytoView hg38]
Mapping of homologs : NCBIBCAS1 [Mapview hg19]  BCAS1 [Mapview hg38]
OMIM602968   
Gene and transcription
Genbank (Entrez)AF041260 AK225656 AK294135 AK294150 AK295318
RefSeq transcript (Entrez)NM_001316361 NM_001323347 NM_003657
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BCAS1
Cluster EST : UnigeneHs.400556 [ NCBI ]
CGAP (NCI)Hs.400556
Alternative Splicing GalleryENSG00000064787
Gene ExpressionBCAS1 [ NCBI-GEO ]   BCAS1 [ EBI - ARRAY_EXPRESS ]   BCAS1 [ SEEK ]   BCAS1 [ MEM ]
Gene Expression Viewer (FireBrowse)BCAS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8537
GTEX Portal (Tissue expression)BCAS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75363   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75363  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75363
Splice isoforms : SwissVarO75363
PhosPhoSitePlusO75363
Domains : Interpro (EBI)NABC1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BCAS1
DMDM Disease mutations8537
Blocks (Seattle)BCAS1
SuperfamilyO75363
Human Protein AtlasENSG00000064787
Peptide AtlasO75363
HPRD04273
IPIIPI00025311   IPI00744780   IPI00908415   IPI00909461   IPI00807587   IPI00793841   IPI00794332   
Protein Interaction databases
DIP (DOE-UCLA)O75363
IntAct (EBI)O75363
FunCoupENSG00000064787
BioGRIDBCAS1
STRING (EMBL)BCAS1
ZODIACBCAS1
Ontologies - Pathways
QuickGOO75363
Ontology : AmiGOcytoplasm  extracellular exosome  
Ontology : EGO-EBIcytoplasm  extracellular exosome  
NDEx NetworkBCAS1
Atlas of Cancer Signalling NetworkBCAS1
Wikipedia pathwaysBCAS1
Orthology - Evolution
OrthoDB8537
GeneTree (enSembl)ENSG00000064787
Phylogenetic Trees/Animal Genes : TreeFamBCAS1
HOVERGENO75363
HOGENOMO75363
Homologs : HomoloGeneBCAS1
Homology/Alignments : Family Browser (UCSC)BCAS1
Gene fusions - Rearrangements
Fusion : MitelmanGFOD1/BCAS1 [6p24.1/20q13.2]  [t(6;20)(p23;q13)]  
Fusion : MitelmanNTNG1/BCAS1 [1p13.3/20q13.2]  [t(1;20)(p13;q13)]  
Fusion : MitelmanRARG/BCAS1 [12q13.13/20q13.2]  [t(12;20)(q13;q13)]  
Fusion : MitelmanSLC12A8/BCAS1 [3q21.2/20q13.2]  [t(3;20)(q21;q13)]  
Fusion: TCGAGFOD1 6p24.1 BCAS1 20q13.2 BRCA
Fusion: TCGARARG 12q13.13 BCAS1 20q13.2 BLCA
Fusion: TCGASLC12A8 3q21.2 BCAS1 20q13.2 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBCAS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BCAS1
dbVarBCAS1
ClinVarBCAS1
1000_GenomesBCAS1 
Exome Variant ServerBCAS1
ExAC (Exome Aggregation Consortium)BCAS1 (select the gene name)
Genetic variants : HAPMAP8537
Genomic Variants (DGV)BCAS1 [DGVbeta]
DECIPHERBCAS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBCAS1 
Mutations
ICGC Data PortalBCAS1 
TCGA Data PortalBCAS1 
Broad Tumor PortalBCAS1
OASIS PortalBCAS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBCAS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBCAS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BCAS1
DgiDB (Drug Gene Interaction Database)BCAS1
DoCM (Curated mutations)BCAS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BCAS1 (select a term)
intoGenBCAS1
Cancer3DBCAS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602968   
Orphanet
MedgenBCAS1
Genetic Testing Registry BCAS1
NextProtO75363 [Medical]
TSGene8537
GENETestsBCAS1
Huge Navigator BCAS1 [HugePedia]
snp3D : Map Gene to Disease8537
BioCentury BCIQBCAS1
ClinGenBCAS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8537
Chemical/Pharm GKB GenePA25284
Clinical trialBCAS1
Miscellaneous
canSAR (ICR)BCAS1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBCAS1
EVEXBCAS1
GoPubMedBCAS1
iHOPBCAS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:07:34 CEST 2017

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