Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BCAS2 (breast carcinoma amplified sequence 2)

Identity

Alias_symbol (synonym)DAM1
SPF27
Snt309
Other alias
HGNC (Hugo) BCAS2
LocusID (NCBI) 10286
Atlas_Id 765
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 115110181 and ends at 115124265 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DENND2C (1p13.2) / BCAS2 (1p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BCAS2   975
Cards
Entrez_Gene (NCBI)BCAS2  10286  breast carcinoma amplified sequence 2
AliasesDAM1; SPF27; Snt309
GeneCards (Weizmann)BCAS2
Ensembl hg19 (Hinxton)ENSG00000116752 [Gene_View]  chr1:115110181-115124265 [Contig_View]  BCAS2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000116752 [Gene_View]  chr1:115110181-115124265 [Contig_View]  BCAS2 [Vega]
ICGC DataPortalENSG00000116752
TCGA cBioPortalBCAS2
AceView (NCBI)BCAS2
Genatlas (Paris)BCAS2
WikiGenes10286
SOURCE (Princeton)BCAS2
Genetics Home Reference (NIH)BCAS2
Genomic and cartography
GoldenPath hg19 (UCSC)BCAS2  -     chr1:115110181-115124265 -  1p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BCAS2  -     1p13.2   [Description]    (hg38-Dec_2013)
EnsemblBCAS2 - 1p13.2 [CytoView hg19]  BCAS2 - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBIBCAS2 [Mapview hg19]  BCAS2 [Mapview hg38]
OMIM605783   
Gene and transcription
Genbank (Entrez)AB020623 AB451245 AB451369 AF081788 AK222637
RefSeq transcript (Entrez)NM_005872
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)BCAS2
Cluster EST : UnigeneHs.22960 [ NCBI ]
CGAP (NCI)Hs.22960
Alternative Splicing GalleryENSG00000116752
Gene ExpressionBCAS2 [ NCBI-GEO ]   BCAS2 [ EBI - ARRAY_EXPRESS ]   BCAS2 [ SEEK ]   BCAS2 [ MEM ]
Gene Expression Viewer (FireBrowse)BCAS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10286
GTEX Portal (Tissue expression)BCAS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75934   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75934  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75934
Splice isoforms : SwissVarO75934
PhosPhoSitePlusO75934
Domains : Interpro (EBI)SPF27   
Domain families : Pfam (Sanger)BCAS2 (PF05700)   
Domain families : Pfam (NCBI)pfam05700   
Conserved Domain (NCBI)BCAS2
DMDM Disease mutations10286
Blocks (Seattle)BCAS2
SuperfamilyO75934
Human Protein AtlasENSG00000116752
Peptide AtlasO75934
HPRD05777
IPIIPI00025178   
Protein Interaction databases
DIP (DOE-UCLA)O75934
IntAct (EBI)O75934
FunCoupENSG00000116752
BioGRIDBCAS2
STRING (EMBL)BCAS2
ZODIACBCAS2
Ontologies - Pathways
QuickGOO75934
Ontology : AmiGORNA splicing, via transesterification reactions  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  Prp19 complex  protein binding  nucleus  nucleoplasm  DNA replication factor A complex  spliceosomal complex  nucleolus  RNA splicing  cell junction  precatalytic spliceosome  catalytic step 1 spliceosome  catalytic step 2 spliceosome  
Ontology : EGO-EBIRNA splicing, via transesterification reactions  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  Prp19 complex  protein binding  nucleus  nucleoplasm  DNA replication factor A complex  spliceosomal complex  nucleolus  RNA splicing  cell junction  precatalytic spliceosome  catalytic step 1 spliceosome  catalytic step 2 spliceosome  
Pathways : KEGGSpliceosome   
NDEx NetworkBCAS2
Atlas of Cancer Signalling NetworkBCAS2
Wikipedia pathwaysBCAS2
Orthology - Evolution
OrthoDB10286
GeneTree (enSembl)ENSG00000116752
Phylogenetic Trees/Animal Genes : TreeFamBCAS2
HOVERGENO75934
HOGENOMO75934
Homologs : HomoloGeneBCAS2
Homology/Alignments : Family Browser (UCSC)BCAS2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBCAS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BCAS2
dbVarBCAS2
ClinVarBCAS2
1000_GenomesBCAS2 
Exome Variant ServerBCAS2
ExAC (Exome Aggregation Consortium)BCAS2 (select the gene name)
Genetic variants : HAPMAP10286
Genomic Variants (DGV)BCAS2 [DGVbeta]
DECIPHER (Syndromes)1:115110181-115124265  ENSG00000116752
CONAN: Copy Number AnalysisBCAS2 
Mutations
ICGC Data PortalBCAS2 
TCGA Data PortalBCAS2 
Broad Tumor PortalBCAS2
OASIS PortalBCAS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBCAS2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBCAS2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BCAS2
DgiDB (Drug Gene Interaction Database)BCAS2
DoCM (Curated mutations)BCAS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BCAS2 (select a term)
intoGenBCAS2
Cancer3DBCAS2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605783   
Orphanet
MedgenBCAS2
Genetic Testing Registry BCAS2
NextProtO75934 [Medical]
TSGene10286
GENETestsBCAS2
Huge Navigator BCAS2 [HugePedia]
snp3D : Map Gene to Disease10286
BioCentury BCIQBCAS2
ClinGenBCAS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10286
Chemical/Pharm GKB GenePA25285
Clinical trialBCAS2
Miscellaneous
canSAR (ICR)BCAS2 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBCAS2
EVEXBCAS2
GoPubMedBCAS2
iHOPBCAS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:53:48 CEST 2017

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