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BCCIP (BRCA2 and CDKN1A interacting protein)

Identity

Alias_namesBRCA2 and CDKN1A-interacting protein
Alias_symbol (synonym)BCCIPalpha
TOK-1
Other aliasTOK1
HGNC (Hugo) BCCIP
LocusID (NCBI) 56647
Atlas_Id 768
Location 10q26.2  [Link to chromosome band 10q26]
Location_base_pair Starts at 125823535 and ends at 125853695 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BCCIP (10q26.2) / BCCIP (10q26.2)BCCIP (10q26.2) / EDRF1 (10q26.13)SLC40A1 (2q32.2) / BCCIP (10q26.2)
BCCIP 10q26.2 C10orf137

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BCCIP   978
Cards
Entrez_Gene (NCBI)BCCIP  56647  BRCA2 and CDKN1A interacting protein
AliasesTOK-1; TOK1
GeneCards (Weizmann)BCCIP
Ensembl hg19 (Hinxton)ENSG00000107949 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107949 [Gene_View]  chr10:125823535-125853695 [Contig_View]  BCCIP [Vega]
ICGC DataPortalENSG00000107949
TCGA cBioPortalBCCIP
AceView (NCBI)BCCIP
Genatlas (Paris)BCCIP
WikiGenes56647
SOURCE (Princeton)BCCIP
Genetics Home Reference (NIH)BCCIP
Genomic and cartography
GoldenPath hg38 (UCSC)BCCIP  -     chr10:125823535-125853695 +  10q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BCCIP  -     10q26.2   [Description]    (hg19-Feb_2009)
EnsemblBCCIP - 10q26.2 [CytoView hg19]  BCCIP - 10q26.2 [CytoView hg38]
Mapping of homologs : NCBIBCCIP [Mapview hg19]  BCCIP [Mapview hg38]
OMIM611883   
Gene and transcription
Genbank (Entrez)AA806484 AB040450 AB040451 AK055691 AK092054
RefSeq transcript (Entrez)NM_016567 NM_078468 NM_078469
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BCCIP
Cluster EST : UnigeneHs.715543 [ NCBI ]
CGAP (NCI)Hs.715543
Alternative Splicing GalleryENSG00000107949
Gene ExpressionBCCIP [ NCBI-GEO ]   BCCIP [ EBI - ARRAY_EXPRESS ]   BCCIP [ SEEK ]   BCCIP [ MEM ]
Gene Expression Viewer (FireBrowse)BCCIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56647
GTEX Portal (Tissue expression)BCCIP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P287   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P287  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P287
Splice isoforms : SwissVarQ9P287
PhosPhoSitePlusQ9P287
Domains : Interpro (EBI)BCP1_family   
Domain families : Pfam (Sanger)BCIP (PF13862)   
Domain families : Pfam (NCBI)pfam13862   
Conserved Domain (NCBI)BCCIP
DMDM Disease mutations56647
Blocks (Seattle)BCCIP
SuperfamilyQ9P287
Human Protein AtlasENSG00000107949
Peptide AtlasQ9P287
HPRD16542
IPIIPI00002203   IPI00220152   IPI00786906   IPI00909058   IPI00068254   
Protein Interaction databases
DIP (DOE-UCLA)Q9P287
IntAct (EBI)Q9P287
FunCoupENSG00000107949
BioGRIDBCCIP
STRING (EMBL)BCCIP
ZODIACBCCIP
Ontologies - Pathways
QuickGOQ9P287
Ontology : AmiGOregulation of cyclin-dependent protein serine/threonine kinase activity  RNA binding  protein binding  nucleus  nucleoplasm  cytosol  DNA repair  cell cycle  kinase regulator activity  nuclear cyclin-dependent protein kinase holoenzyme complex  neuroendocrine cell differentiation  
Ontology : EGO-EBIregulation of cyclin-dependent protein serine/threonine kinase activity  RNA binding  protein binding  nucleus  nucleoplasm  cytosol  DNA repair  cell cycle  kinase regulator activity  nuclear cyclin-dependent protein kinase holoenzyme complex  neuroendocrine cell differentiation  
NDEx NetworkBCCIP
Atlas of Cancer Signalling NetworkBCCIP
Wikipedia pathwaysBCCIP
Orthology - Evolution
OrthoDB56647
GeneTree (enSembl)ENSG00000107949
Phylogenetic Trees/Animal Genes : TreeFamBCCIP
HOVERGENQ9P287
HOGENOMQ9P287
Homologs : HomoloGeneBCCIP
Homology/Alignments : Family Browser (UCSC)BCCIP
Gene fusions - Rearrangements
Fusion : MitelmanBCCIP/EDRF1 [10q26.2/10q26.13]  
Fusion: TCGABCCIP 10q26.2 C10orf137 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBCCIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BCCIP
dbVarBCCIP
ClinVarBCCIP
1000_GenomesBCCIP 
Exome Variant ServerBCCIP
ExAC (Exome Aggregation Consortium)BCCIP (select the gene name)
Genetic variants : HAPMAP56647
Genomic Variants (DGV)BCCIP [DGVbeta]
DECIPHERBCCIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBCCIP 
Mutations
ICGC Data PortalBCCIP 
TCGA Data PortalBCCIP 
Broad Tumor PortalBCCIP
OASIS PortalBCCIP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBCCIP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBCCIP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BCCIP
DgiDB (Drug Gene Interaction Database)BCCIP
DoCM (Curated mutations)BCCIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BCCIP (select a term)
intoGenBCCIP
Cancer3DBCCIP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611883   
Orphanet
MedgenBCCIP
Genetic Testing Registry BCCIP
NextProtQ9P287 [Medical]
TSGene56647
GENETestsBCCIP
Target ValidationBCCIP
Huge Navigator BCCIP [HugePedia]
snp3D : Map Gene to Disease56647
BioCentury BCIQBCCIP
ClinGenBCCIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56647
Chemical/Pharm GKB GenePA25290
Clinical trialBCCIP
Miscellaneous
canSAR (ICR)BCCIP (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBCCIP
EVEXBCCIP
GoPubMedBCCIP
iHOPBCCIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:56:00 CEST 2017

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