Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BCCIP (BRCA2 and CDKN1A interacting protein)

Identity

Alias (NCBI)TOK-1
TOK1
HGNC (Hugo) BCCIP
HGNC Alias symbBCCIPalpha
TOK-1
HGNC Previous nameBRCA2 and CDKN1A-interacting protein
LocusID (NCBI) 56647
Atlas_Id 768
Location 10q26.2  [Link to chromosome band 10q26]
Location_base_pair Starts at 125823546 and ends at 125842802 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BCCIP (10q26.2) / BCCIP (10q26.2)BCCIP (10q26.2) / EDRF1 (10q26.13)SLC40A1 (2q32.2) / BCCIP (10q26.2)
BCCIP 10q26.2 C10orf137

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)BCCIP   978
Cards
Entrez_Gene (NCBI)BCCIP    BRCA2 and CDKN1A interacting protein
AliasesTOK-1; TOK1
GeneCards (Weizmann)BCCIP
Ensembl hg19 (Hinxton)ENSG00000107949 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107949 [Gene_View]  ENSG00000107949 [Sequence]  chr10:125823546-125842802 [Contig_View]  BCCIP [Vega]
ICGC DataPortalENSG00000107949
TCGA cBioPortalBCCIP
AceView (NCBI)BCCIP
Genatlas (Paris)BCCIP
SOURCE (Princeton)BCCIP
Genetics Home Reference (NIH)BCCIP
Genomic and cartography
GoldenPath hg38 (UCSC)BCCIP  -     chr10:125823546-125842802 +  10q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BCCIP  -     10q26.2   [Description]    (hg19-Feb_2009)
GoldenPathBCCIP - 10q26.2 [CytoView hg19]  BCCIP - 10q26.2 [CytoView hg38]
ImmunoBaseENSG00000107949
Genome Data Viewer NCBIBCCIP [Mapview hg19]  
OMIM611883   
Gene and transcription
Genbank (Entrez)AA806484 AB040450 AB040451 AK055691 AK092054
RefSeq transcript (Entrez)NM_016567 NM_078468 NM_078469
Consensus coding sequences : CCDS (NCBI)BCCIP
Gene ExpressionBCCIP [ NCBI-GEO ]   BCCIP [ EBI - ARRAY_EXPRESS ]   BCCIP [ SEEK ]   BCCIP [ MEM ]
Gene Expression Viewer (FireBrowse)BCCIP [ Firebrowse - Broad ]
GenevisibleExpression of BCCIP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56647
GTEX Portal (Tissue expression)BCCIP
Human Protein AtlasENSG00000107949-BCCIP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P287   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P287  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P287
PhosPhoSitePlusQ9P287
Domains : Interpro (EBI)BCP1_family   
Domain families : Pfam (Sanger)BCIP (PF13862)   
Domain families : Pfam (NCBI)pfam13862   
Conserved Domain (NCBI)BCCIP
SuperfamilyQ9P287
AlphaFold pdb e-kbQ9P287   
Human Protein Atlas [tissue]ENSG00000107949-BCCIP [tissue]
HPRD16542
Protein Interaction databases
DIP (DOE-UCLA)Q9P287
IntAct (EBI)Q9P287
BioGRIDBCCIP
STRING (EMBL)BCCIP
ZODIACBCCIP
Ontologies - Pathways
QuickGOQ9P287
Ontology : AmiGOregulation of cyclin-dependent protein serine/threonine kinase activity  microtubule cytoskeleton organization  RNA binding  protein binding  nucleus  nucleoplasm  centrosome  centriole  cytosol  DNA repair  mitotic spindle organization  kinase regulator activity  nuclear cyclin-dependent protein kinase holoenzyme complex  microtubule anchoring  neuroendocrine cell differentiation  mitotic spindle assembly  mitotic spindle pole  
Ontology : EGO-EBIregulation of cyclin-dependent protein serine/threonine kinase activity  microtubule cytoskeleton organization  RNA binding  protein binding  nucleus  nucleoplasm  centrosome  centriole  cytosol  DNA repair  mitotic spindle organization  kinase regulator activity  nuclear cyclin-dependent protein kinase holoenzyme complex  microtubule anchoring  neuroendocrine cell differentiation  mitotic spindle assembly  mitotic spindle pole  
NDEx NetworkBCCIP
Atlas of Cancer Signalling NetworkBCCIP
Wikipedia pathwaysBCCIP
Orthology - Evolution
OrthoDB56647
GeneTree (enSembl)ENSG00000107949
Phylogenetic Trees/Animal Genes : TreeFamBCCIP
Homologs : HomoloGeneBCCIP
Homology/Alignments : Family Browser (UCSC)BCCIP
Gene fusions - Rearrangements
Fusion : MitelmanBCCIP/EDRF1 [10q26.2/10q26.13]  
Fusion : QuiverBCCIP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBCCIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BCCIP
dbVarBCCIP
ClinVarBCCIP
MonarchBCCIP
1000_GenomesBCCIP 
Exome Variant ServerBCCIP
GNOMAD BrowserENSG00000107949
Varsome BrowserBCCIP
ACMGBCCIP variants
VarityQ9P287
Genomic Variants (DGV)BCCIP [DGVbeta]
DECIPHERBCCIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBCCIP 
Mutations
ICGC Data PortalBCCIP 
TCGA Data PortalBCCIP 
Broad Tumor PortalBCCIP
OASIS PortalBCCIP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBCCIP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBCCIP
Mutations and Diseases : HGMDBCCIP
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaBCCIP
DgiDB (Drug Gene Interaction Database)BCCIP
DoCM (Curated mutations)BCCIP
CIViC (Clinical Interpretations of Variants in Cancer)BCCIP
Cancer3DBCCIP
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611883   
Orphanet
DisGeNETBCCIP
MedgenBCCIP
Genetic Testing Registry BCCIP
NextProtQ9P287 [Medical]
GENETestsBCCIP
Target ValidationBCCIP
Huge Navigator BCCIP [HugePedia]
ClinGenBCCIP
Clinical trials, drugs, therapy
MyCancerGenomeBCCIP
Protein Interactions : CTDBCCIP
Pharm GKB GenePA25290
PharosQ9P287
Clinical trialBCCIP
Miscellaneous
canSAR (ICR)BCCIP
HarmonizomeBCCIP
DataMed IndexBCCIP
Probes
Litterature
PubMed79 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBCCIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:01:02 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.