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BCDIN3D (BCDIN3 domain containing RNA methyltransferase)

Identity

Alias_namesBCDIN3 domain containing
Other alias-
HGNC (Hugo) BCDIN3D
LocusID (NCBI) 144233
Atlas_Id 53123
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 49836043 and ends at 49843129 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BCDIN3D   27050
Cards
Entrez_Gene (NCBI)BCDIN3D  144233  BCDIN3 domain containing RNA methyltransferase
Aliases
GeneCards (Weizmann)BCDIN3D
Ensembl hg19 (Hinxton)ENSG00000186666 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186666 [Gene_View]  chr12:49836043-49843129 [Contig_View]  BCDIN3D [Vega]
ICGC DataPortalENSG00000186666
TCGA cBioPortalBCDIN3D
AceView (NCBI)BCDIN3D
Genatlas (Paris)BCDIN3D
WikiGenes144233
SOURCE (Princeton)BCDIN3D
Genetics Home Reference (NIH)BCDIN3D
Genomic and cartography
GoldenPath hg38 (UCSC)BCDIN3D  -     chr12:49836043-49843129 -  12q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BCDIN3D  -     12q13.12   [Description]    (hg19-Feb_2009)
EnsemblBCDIN3D - 12q13.12 [CytoView hg19]  BCDIN3D - 12q13.12 [CytoView hg38]
Mapping of homologs : NCBIBCDIN3D [Mapview hg19]  BCDIN3D [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK292194 BC040957 BC053560 BU622810 CD690663
RefSeq transcript (Entrez)NM_181708
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BCDIN3D
Cluster EST : UnigeneHs.142736 [ NCBI ]
CGAP (NCI)Hs.142736
Alternative Splicing GalleryENSG00000186666
Gene ExpressionBCDIN3D [ NCBI-GEO ]   BCDIN3D [ EBI - ARRAY_EXPRESS ]   BCDIN3D [ SEEK ]   BCDIN3D [ MEM ]
Gene Expression Viewer (FireBrowse)BCDIN3D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144233
GTEX Portal (Tissue expression)BCDIN3D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5W3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5W3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5W3
Splice isoforms : SwissVarQ7Z5W3
Catalytic activity : Enzyme2.1.1.- [ Enzyme-Expasy ]   2.1.1.-2.1.1.- [ IntEnz-EBI ]   2.1.1.- [ BRENDA ]   2.1.1.- [ KEGG ]   
PhosPhoSitePlusQ7Z5W3
Domaine pattern : Prosite (Expaxy)BIN3_SAM (PS51515)   
Domains : Interpro (EBI)Bin3_C    BIN3_SAM-bd_dom    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Bin3 (PF06859)   
Domain families : Pfam (NCBI)pfam06859   
Conserved Domain (NCBI)BCDIN3D
DMDM Disease mutations144233
Blocks (Seattle)BCDIN3D
SuperfamilyQ7Z5W3
Human Protein AtlasENSG00000186666
Peptide AtlasQ7Z5W3
HPRD14065
IPIIPI00376228   IPI01021022   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5W3
IntAct (EBI)Q7Z5W3
FunCoupENSG00000186666
BioGRIDBCDIN3D
STRING (EMBL)BCDIN3D
ZODIACBCDIN3D
Ontologies - Pathways
QuickGOQ7Z5W3
Ontology : AmiGORNA methylation  protein binding  nucleus  cytoplasm  cytosol  O-methyltransferase activity  RNA methyltransferase activity  miRNA metabolic process  negative regulation of pre-miRNA processing  
Ontology : EGO-EBIRNA methylation  protein binding  nucleus  cytoplasm  cytosol  O-methyltransferase activity  RNA methyltransferase activity  miRNA metabolic process  negative regulation of pre-miRNA processing  
NDEx NetworkBCDIN3D
Atlas of Cancer Signalling NetworkBCDIN3D
Wikipedia pathwaysBCDIN3D
Orthology - Evolution
OrthoDB144233
GeneTree (enSembl)ENSG00000186666
Phylogenetic Trees/Animal Genes : TreeFamBCDIN3D
HOVERGENQ7Z5W3
HOGENOMQ7Z5W3
Homologs : HomoloGeneBCDIN3D
Homology/Alignments : Family Browser (UCSC)BCDIN3D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBCDIN3D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BCDIN3D
dbVarBCDIN3D
ClinVarBCDIN3D
1000_GenomesBCDIN3D 
Exome Variant ServerBCDIN3D
ExAC (Exome Aggregation Consortium)BCDIN3D (select the gene name)
Genetic variants : HAPMAP144233
Genomic Variants (DGV)BCDIN3D [DGVbeta]
DECIPHERBCDIN3D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBCDIN3D 
Mutations
ICGC Data PortalBCDIN3D 
TCGA Data PortalBCDIN3D 
Broad Tumor PortalBCDIN3D
OASIS PortalBCDIN3D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBCDIN3D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBCDIN3D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BCDIN3D
DgiDB (Drug Gene Interaction Database)BCDIN3D
DoCM (Curated mutations)BCDIN3D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BCDIN3D (select a term)
intoGenBCDIN3D
Cancer3DBCDIN3D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBCDIN3D
Genetic Testing Registry BCDIN3D
NextProtQ7Z5W3 [Medical]
TSGene144233
GENETestsBCDIN3D
Target ValidationBCDIN3D
Huge Navigator BCDIN3D [HugePedia]
snp3D : Map Gene to Disease144233
BioCentury BCIQBCDIN3D
ClinGenBCDIN3D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144233
Chemical/Pharm GKB GenePA162377410
Clinical trialBCDIN3D
Miscellaneous
canSAR (ICR)BCDIN3D (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBCDIN3D
EVEXBCDIN3D
GoPubMedBCDIN3D
iHOPBCDIN3D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:25:22 CEST 2017

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