Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BCL3 (B-cell CLL/lymphoma 3)

Identity

Alias_namesD19S37
BCL4
Other alias
HGNC (Hugo) BCL3
LocusID (NCBI) 602
Atlas_Id 67
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 44748721 and ends at 44760044 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		BCL3 (19q13.32) / ATP9B (18q23)BCL3 (19q13.32) / HIPK4 (19q13.2)BCL3 (19q13.32) / IGH (14q32.33)
BCL3 (19q13.32) / IGSF23 (19q13.31)BCL3 (19q13.32) / MYC (8q24.21)IGH (14q32.33) / BCL3 (19q13.32)
IGHG1 (14q32.33) / BCL3 (19q13.32)IGK (14q32.33) / BCL3 (19q13.32)IGL (22q11.22) / BCL3 (19q13.32)
IGLV3-10 () / BCL3 (19q13.32)Ig () / BCL3 (19q13.32)BCL3 19q13.32 / ATP9B 18q23
BCL3 19q13.32 / IGSF23 19q13.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Protein

 

Breakpoints

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 9 ]
  Classical Hodgkin lymphoma
Chronic lymphocytic leukaemia (CLL)
Hodgkin lymphoma
Small lymphocytic lymphoma
t(1;6)(p36;p21)
t(8;17)(q24;q22) ???BCL3/MYC
t(2;19)(p12;q13.3) IGK/BCL3::t(14;19)(q32;q13.3) IGH/BCL3::t(19;22)(q13.3;q11) BCL3/IGL
t(14;19)(q32;p13) IGH/EPOR::t(14;19)(q32;p13) IGH/BRD4 ?
t(14;19)(q32;q13) IGH/CEBPA

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma

External links

Nomenclature
HGNC (Hugo)BCL3   998
Cards
Entrez_Gene (NCBI)BCL3  602  B-cell CLL/lymphoma 3
AliasesBCL4; D19S37
GeneCards (Weizmann)BCL3
Ensembl hg19 (Hinxton)ENSG00000069399 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000069399 [Gene_View]  chr19:44748721-44760044 [Contig_View]  BCL3 [Vega]
ICGC DataPortalENSG00000069399
TCGA cBioPortalBCL3
AceView (NCBI)BCL3
Genatlas (Paris)BCL3
WikiGenes602
SOURCE (Princeton)BCL3
Genetics Home Reference (NIH)BCL3
Genomic and cartography
GoldenPath hg38 (UCSC)BCL3  -     chr19:44748721-44760044 +  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BCL3  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblBCL3 - 19q13.32 [CytoView hg19]  BCL3 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIBCL3 [Mapview hg19]  BCL3 [Mapview hg38]
OMIM109560   
Gene and transcription
Genbank (Entrez)AK296180 AK309453 BC064993 BU501187 M31732
RefSeq transcript (Entrez)NM_005178
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BCL3
Cluster EST : UnigeneHs.31210 [ NCBI ]
CGAP (NCI)Hs.31210
Alternative Splicing GalleryENSG00000069399
Gene ExpressionBCL3 [ NCBI-GEO ]   BCL3 [ EBI - ARRAY_EXPRESS ]   BCL3 [ SEEK ]   BCL3 [ MEM ]
Gene Expression Viewer (FireBrowse)BCL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)602
GTEX Portal (Tissue expression)BCL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP20749   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP20749  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP20749
Splice isoforms : SwissVarP20749
PhosPhoSitePlusP20749
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)BCL3
DMDM Disease mutations602
Blocks (Seattle)BCL3
PDB (SRS)1K1A    1K1B   
PDB (PDBSum)1K1A    1K1B   
PDB (IMB)1K1A    1K1B   
PDB (RSDB)1K1A    1K1B   
Structural Biology KnowledgeBase1K1A    1K1B   
SCOP (Structural Classification of Proteins)1K1A    1K1B   
CATH (Classification of proteins structures)1K1A    1K1B   
SuperfamilyP20749
Human Protein AtlasENSG00000069399
Peptide AtlasP20749
HPRD00179
IPIIPI00791379   IPI00922258   IPI00893435   
Protein Interaction databases
DIP (DOE-UCLA)P20749
IntAct (EBI)P20749
FunCoupENSG00000069399
BioGRIDBCL3
STRING (EMBL)BCL3
ZODIACBCL3
Ontologies - Pathways
QuickGOP20749
Ontology : AmiGOprotein import into nucleus, translocation  follicular dendritic cell differentiation  marginal zone B cell differentiation  humoral immune response mediated by circulating immunoglobulin  germinal center formation  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  plasma membrane  transcription, DNA-templated  cellular response to DNA damage stimulus  I-kappaB kinase/NF-kappaB signaling  transcription factor binding  response to virus  response to UV-C  antimicrobial humoral response  extracellular matrix organization  DNA damage response, signal transduction by p53 class mediator  midbody  protein binding, bridging  positive regulation of interferon-gamma production  Bcl3-Bcl10 complex  Bcl3/NF-kappaB2 complex  T-helper 1 type immune response  regulation of NF-kappaB import into nucleus  negative regulation of tumor necrosis factor biosynthetic process  defense response to bacterium  intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  defense response to protozoan  regulation of apoptotic process  negative regulation of apoptotic process  intracellular membrane-bounded organelle  protein complex  T-helper 2 cell differentiation  positive regulation of interleukin-10 biosynthetic process  negative regulation of interleukin-8 biosynthetic process  positive regulation of translation  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  perinuclear region of cytoplasm  spleen development  regulation of DNA binding  maintenance of protein location in nucleus  
Ontology : EGO-EBIprotein import into nucleus, translocation  follicular dendritic cell differentiation  marginal zone B cell differentiation  humoral immune response mediated by circulating immunoglobulin  germinal center formation  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  plasma membrane  transcription, DNA-templated  cellular response to DNA damage stimulus  I-kappaB kinase/NF-kappaB signaling  transcription factor binding  response to virus  response to UV-C  antimicrobial humoral response  extracellular matrix organization  DNA damage response, signal transduction by p53 class mediator  midbody  protein binding, bridging  positive regulation of interferon-gamma production  Bcl3-Bcl10 complex  Bcl3/NF-kappaB2 complex  T-helper 1 type immune response  regulation of NF-kappaB import into nucleus  negative regulation of tumor necrosis factor biosynthetic process  defense response to bacterium  intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  defense response to protozoan  regulation of apoptotic process  negative regulation of apoptotic process  intracellular membrane-bounded organelle  protein complex  T-helper 2 cell differentiation  positive regulation of interleukin-10 biosynthetic process  negative regulation of interleukin-8 biosynthetic process  positive regulation of translation  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  perinuclear region of cytoplasm  spleen development  regulation of DNA binding  maintenance of protein location in nucleus  
Pathways : KEGGTNF signaling pathway   
NDEx NetworkBCL3
Atlas of Cancer Signalling NetworkBCL3
Wikipedia pathwaysBCL3
Orthology - Evolution
OrthoDB602
GeneTree (enSembl)ENSG00000069399
Phylogenetic Trees/Animal Genes : TreeFamBCL3
HOVERGENP20749
HOGENOMP20749
Homologs : HomoloGeneBCL3
Homology/Alignments : Family Browser (UCSC)BCL3
Gene fusions - Rearrangements
Fusion : MitelmanBCL3/ATP9B [19q13.32/18q23]  
Fusion : MitelmanBCL3/HIPK4 [19q13.32/19q13.2]  [t(19;19)(q13;q13)]  
Fusion : MitelmanBCL3/IGSF23 [19q13.32/19q13.31]  [t(19;19)(q13;q13)]  
Fusion : MitelmanBCL3/MYC [19q13.32/8q24.21]  [t(8;19)(q24;q13)]  
Fusion : MitelmanIGH/BCL3 [14q32.33/19q13.32]  [t(14;19)(q32;q13)]  [t(2;19;14)(p12;q13;q32)]  
[t(2;19;14)(q32;q13;q32)]  [t(7;19;14)(q21;q13;q32)]  
Fusion : MitelmanIGK/BCL3 [2p11.2/19q13.32]  [t(2;19)(p11;q13)]  
Fusion : MitelmanIGL/BCL3 [22q11.22/19q13.32]  [t(19;22)(q13;q11)]  [t(1;19;22)(q23;q13;q11)]  
Fusion: TCGABCL3 19q13.32 ATP9B 18q23 BRCA
Fusion: TCGABCL3 19q13.32 IGSF23 19q13.31 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBCL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BCL3
dbVarBCL3
ClinVarBCL3
1000_GenomesBCL3 
Exome Variant ServerBCL3
ExAC (Exome Aggregation Consortium)BCL3 (select the gene name)
Genetic variants : HAPMAP602
Genomic Variants (DGV)BCL3 [DGVbeta]
DECIPHERBCL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBCL3 
Mutations
ICGC Data PortalBCL3 
TCGA Data PortalBCL3 
Broad Tumor PortalBCL3
OASIS PortalBCL3 [ Somatic mutations - Copy number]
Cancer Gene: CensusBCL3 
Somatic Mutations in Cancer : COSMICBCL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBCL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BCL3
DgiDB (Drug Gene Interaction Database)BCL3
DoCM (Curated mutations)BCL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BCL3 (select a term)
intoGenBCL3
Cancer3DBCL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM109560   
Orphanet
MedgenBCL3
Genetic Testing Registry BCL3
NextProtP20749 [Medical]
TSGene602
GENETestsBCL3
Target ValidationBCL3
Huge Navigator BCL3 [HugePedia]
snp3D : Map Gene to Disease602
BioCentury BCIQBCL3
ClinGenBCL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD602
Chemical/Pharm GKB GenePA25310
Clinical trialBCL3
Miscellaneous
canSAR (ICR)BCL3 (select the gene name)
Probes
Litterature
PubMed105 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBCL3
EVEXBCL3
GoPubMedBCL3
iHOPBCL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 18:59:06 CEST 2017
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.