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BCL6B (B-cell CLL/lymphoma 6, member B)

Identity

Other namesBAZF
ZBTB28
ZNF62
HGNC (Hugo) BCL6B
LocusID (NCBI) 255877
Location 17p13.1
Location_base_pair Starts at 6926369 and ends at 6932961 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BCL6B   1002
Cards
Entrez_Gene (NCBI)BCL6B  255877  B-cell CLL/lymphoma 6, member B
GeneCards (Weizmann)BCL6B
Ensembl hg19 (Hinxton)ENSG00000161940 [Gene_View]  chr17:6926369-6932961 [Contig_View]  BCL6B [Vega]
Ensembl hg38 (Hinxton)ENSG00000161940 [Gene_View]  chr17:6926369-6932961 [Contig_View]  BCL6B [Vega]
ICGC DataPortalENSG00000161940
cBioPortalBCL6B
AceView (NCBI)BCL6B
Genatlas (Paris)BCL6B
WikiGenes255877
SOURCE (Princeton)BCL6B
Genomic and cartography
GoldenPath hg19 (UCSC)BCL6B  -     chr17:6926369-6932961 +  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BCL6B  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblBCL6B - 17p13.1 [CytoView hg19]  BCL6B - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIBCL6B [Mapview hg19]  BCL6B [Mapview hg38]
OMIM608992   
Gene and transcription
Genbank (Entrez)AB076580 AK024695 AK122893 AK292878 AK293102
RefSeq transcript (Entrez)NM_181844
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010718 NW_001838403 NW_004929405
Consensus coding sequences : CCDS (NCBI)BCL6B
Cluster EST : UnigeneHs.22575 [ NCBI ]
CGAP (NCI)Hs.22575
Alternative Splicing : Fast-db (Paris)GSHG0012180
Alternative Splicing GalleryENSG00000161940
Gene ExpressionBCL6B [ NCBI-GEO ]     BCL6B [ SEEK ]   BCL6B [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N143 (Uniprot)
NextProtQ8N143  [Medical]
With graphics : InterProQ8N143
Splice isoforms : SwissVarQ8N143 (Swissvar)
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ-like    BTB/POZ_fold    BTB_POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrQ8N143
Domain families : Pfam (Sanger)BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00651   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
DMDM Disease mutations255877
Blocks (Seattle)Q8N143
Human Protein AtlasENSG00000161940
Peptide AtlasQ8N143
HPRD16414
IPIIPI01014534   IPI00166071   
Protein Interaction databases
DIP (DOE-UCLA)Q8N143
IntAct (EBI)Q8N143
FunCoupENSG00000161940
BioGRIDBCL6B
IntegromeDBBCL6B
STRING (EMBL)BCL6B
Ontologies - Pathways
QuickGOQ8N143
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  nucleus  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  nucleus  metal ion binding  
Protein Interaction DatabaseBCL6B
DoCM (Curated mutations)BCL6B
Wikipedia pathwaysBCL6B
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerBCL6B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BCL6B
dbVarBCL6B
ClinVarBCL6B
1000_GenomesBCL6B 
Exome Variant ServerBCL6B
SNP (GeneSNP Utah)BCL6B
SNP : HGBaseBCL6B
Genetic variants : HAPMAPBCL6B
Genomic VariantsBCL6B  BCL6B [DGVbeta]
Mutations
ICGC Data PortalENSG00000161940 
Somatic Mutations in Cancer : COSMICBCL6B 
CONAN: Copy Number AnalysisBCL6B 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:6926369-6932961
Mutations and Diseases : HGMDBCL6B
OMIM608992   
MedgenBCL6B
NextProtQ8N143 [Medical]
GENETestsBCL6B
Disease Genetic AssociationBCL6B
Huge Navigator BCL6B [HugePedia]  BCL6B [HugeCancerGEM]
snp3D : Map Gene to Disease255877
DGIdb (Drug Gene Interaction db)BCL6B
General knowledge
Homologs : HomoloGeneBCL6B
Homology/Alignments : Family Browser (UCSC)BCL6B
Phylogenetic Trees/Animal Genes : TreeFamBCL6B
Chemical/Protein Interactions : CTD255877
Chemical/Pharm GKB GenePA25313
Clinical trialBCL6B
Cancer Resource (Charite)ENSG00000161940
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
CoreMineBCL6B
GoPubMedBCL6B
iHOPBCL6B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 20:21:42 CET 2014

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