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BCL6B (B-cell CLL/lymphoma 6B)

Identity

Alias_namesZNF62
zinc finger protein 62
B-cell CLL/lymphoma 6, member B (zinc finger protein)
B-cell CLL/lymphoma 6, member B
Alias_symbol (synonym)ZBTB28
BAZF
HGNC (Hugo) BCL6B
LocusID (NCBI) 255877
Atlas_Id 777
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 6926369 and ends at 6932961 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BCL6B   1002
Cards
Entrez_Gene (NCBI)BCL6B  255877  B-cell CLL/lymphoma 6B
AliasesBAZF; ZBTB28; ZNF62
GeneCards (Weizmann)BCL6B
Ensembl hg19 (Hinxton)ENSG00000161940 [Gene_View]  chr17:6926369-6932961 [Contig_View]  BCL6B [Vega]
Ensembl hg38 (Hinxton)ENSG00000161940 [Gene_View]  chr17:6926369-6932961 [Contig_View]  BCL6B [Vega]
ICGC DataPortalENSG00000161940
TCGA cBioPortalBCL6B
AceView (NCBI)BCL6B
Genatlas (Paris)BCL6B
WikiGenes255877
SOURCE (Princeton)BCL6B
Genetics Home Reference (NIH)BCL6B
Genomic and cartography
GoldenPath hg19 (UCSC)BCL6B  -     chr17:6926369-6932961 +  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BCL6B  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblBCL6B - 17p13.1 [CytoView hg19]  BCL6B - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIBCL6B [Mapview hg19]  BCL6B [Mapview hg38]
OMIM608992   
Gene and transcription
Genbank (Entrez)AB076580 AK024695 AK122893 AK292878 AK293102
RefSeq transcript (Entrez)NM_181844
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)BCL6B
Cluster EST : UnigeneHs.22575 [ NCBI ]
CGAP (NCI)Hs.22575
Alternative Splicing GalleryENSG00000161940
Gene ExpressionBCL6B [ NCBI-GEO ]   BCL6B [ EBI - ARRAY_EXPRESS ]   BCL6B [ SEEK ]   BCL6B [ MEM ]
Gene Expression Viewer (FireBrowse)BCL6B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255877
GTEX Portal (Tissue expression)BCL6B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N143   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N143  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N143
Splice isoforms : SwissVarQ8N143
PhosPhoSitePlusQ8N143
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00651   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)BCL6B
DMDM Disease mutations255877
Blocks (Seattle)BCL6B
SuperfamilyQ8N143
Human Protein AtlasENSG00000161940
Peptide AtlasQ8N143
HPRD16414
IPIIPI01014534   IPI00166071   
Protein Interaction databases
DIP (DOE-UCLA)Q8N143
IntAct (EBI)Q8N143
FunCoupENSG00000161940
BioGRIDBCL6B
STRING (EMBL)BCL6B
ZODIACBCL6B
Ontologies - Pathways
QuickGOQ8N143
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II regulatory region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  nucleus  myeloid cell differentiation  metal ion binding  regulation of neurogenesis  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II regulatory region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  nucleus  myeloid cell differentiation  metal ion binding  regulation of neurogenesis  
NDEx NetworkBCL6B
Atlas of Cancer Signalling NetworkBCL6B
Wikipedia pathwaysBCL6B
Orthology - Evolution
OrthoDB255877
GeneTree (enSembl)ENSG00000161940
Phylogenetic Trees/Animal Genes : TreeFamBCL6B
HOVERGENQ8N143
HOGENOMQ8N143
Homologs : HomoloGeneBCL6B
Homology/Alignments : Family Browser (UCSC)BCL6B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBCL6B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BCL6B
dbVarBCL6B
ClinVarBCL6B
1000_GenomesBCL6B 
Exome Variant ServerBCL6B
ExAC (Exome Aggregation Consortium)BCL6B (select the gene name)
Genetic variants : HAPMAP255877
Genomic Variants (DGV)BCL6B [DGVbeta]
DECIPHER (Syndromes)17:6926369-6932961  ENSG00000161940
CONAN: Copy Number AnalysisBCL6B 
Mutations
ICGC Data PortalBCL6B 
TCGA Data PortalBCL6B 
Broad Tumor PortalBCL6B
OASIS PortalBCL6B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBCL6B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBCL6B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BCL6B
DgiDB (Drug Gene Interaction Database)BCL6B
DoCM (Curated mutations)BCL6B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BCL6B (select a term)
intoGenBCL6B
Cancer3DBCL6B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608992   
Orphanet
MedgenBCL6B
Genetic Testing Registry BCL6B
NextProtQ8N143 [Medical]
TSGene255877
GENETestsBCL6B
Huge Navigator BCL6B [HugePedia]
snp3D : Map Gene to Disease255877
BioCentury BCIQBCL6B
ClinGenBCL6B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255877
Chemical/Pharm GKB GenePA25313
Clinical trialBCL6B
Miscellaneous
canSAR (ICR)BCL6B (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBCL6B
EVEXBCL6B
GoPubMedBCL6B
iHOPBCL6B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Nov 18 19:32:05 CET 2016

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