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BCL6B (B-cell CLL/lymphoma 6, member B)

Identity

Other namesBAZF
ZBTB28
ZNF62
HGNC (Hugo) BCL6B
LocusID (NCBI) 255877
Location 17p13.1
Location_base_pair Starts at 6926369 and ends at 6932961 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BCL6B   1002
Entrez_Gene (NCBI)BCL6B  255877  B-cell CLL/lymphoma 6, member B
Cards
GeneCards (Weizmann)BCL6B
Ensembl (Hinxton)ENSG00000161940 [Gene_View]  chr17:6926369-6932961 [Contig_View]  BCL6B [Vega]
AceView (NCBI)BCL6B
Genatlas (Paris)BCL6B
SOURCE (Stanford)NM_181844
Genomic and cartography
GoldenPath (UCSC)BCL6B  -  17p13.1   chr17:6926369-6932961 +  17p13.1   [Description]    (hg19-Feb_2009)
EnsemblBCL6B - 17p13.1 [CytoView]
Mapping of homologs : NCBIBCL6B [Mapview]
OMIM608992   
Gene and transcription
Genbank (Entrez)AB076580 AK024695 AK122893 AK292878 AK293102
RefSeq transcript (SRS)NM_181844
RefSeq transcript (Entrez)NM_181844
RefSeq genomic (SRS)AC_000149 NC_000017 NC_018928 NT_010718 NW_001838403 NW_004078090
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010718 NW_001838403 NW_004078090
Consensus coding sequences : CCDS (NCBI)BCL6B
Cluster EST : UnigeneHs.22575 [ SRS ] Hs.22575 [ NCBI ]
CGAP (NCI)Hs.22575
Alternative Splicing : Fast-db (Paris)GSHG0012180
Alternative Splicing GalleryENSG00000161940
Gene ExpressionBCL6B [ NCBI-GEO ]   BCL6B [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N143 (SRS) Q8N143 (Uniprot)
NextProtQ8N143
With graphics : InterProQ8N143
Splice isoforms : SwissVarQ8N143(Swissvar)
Domaine pattern : Prosite (SRS)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (SRS)BTB/POZ-like    BTB/POZ_fold    BTB_POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domains : Interpro (EBI)BTB/POZ-like    BTB/POZ_fold    BTB_POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrQ8N143
Domain families : Pfam (SRS)BTB (PF00651)   
Domain families : Pfam (Sanger)BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00651   
Domain families : Smart (EMBL)BTB (SM00225)  ZnF_C2H2 (SM00355)  
DMDM255877
Blocks (Seattle)Q8N143
Human Protein AtlasENSG00000161940
HPRD16414
IPIIPI01014534   IPI00166071   
Protein Interaction databases
DIP (DOE-UCLA)Q8N143
IntAct (EBI)Q8N143
FunCoupENSG00000161940
REACTOMEBCL6B
Protein Interaction Database255877
BioGRIDBCL6B
InParanoidQ8N143
Interologous Interaction database Q8N143
IntegromeDBBCL6B
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)BCL6B
SNP (GeneSNP Utah)BCL6B
SNP : HGBaseBCL6B
Genetic variants : HAPMAPBCL6B
Somatic Mutations in Cancer : COSMICBCL6B 
CONAN: Copy Number AnalysisBCL6B 
Mutations and Diseases : HGMDBCL6B
OMIM608992   
GENETests608992   
Disease Genetic AssociationBCL6B
Huge Navigator BCL6B [HugePedia]  BCL6B [HugeCancerGEM]
Genomic VariantsBCL6B  BCL6B [DGVbeta]
snp3D : Map Gene to Disease255877
General knowledge
Homologs : HomoloGeneBCL6B
Homology/Alignments : Family Browser (UCSC)BCL6B
Phylogenetic Trees/Animal Genes : TreeFamBCL6B
Chemical/Protein Interactions : CTD255877
Chemical/Pharm GKB GenePA25313
Clinical trialBCL6B
Cancer Resource (Charite)ENSG00000161940
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  nucleus  zinc ion binding  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  nucleus  zinc ion binding  metal ion binding  
Other databases
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
PubGeneBCL6B
iHOPBCL6B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:47:39 CEST 2013
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