Atlas of Genetics and Cytogenetics in Oncology and Haematology

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BCL7C (BAF chromatin remodeling complex subunit BCL7C)

Identity

Alias (NCBI)-
HGNC (Hugo) BCL7C
HGNC Previous nameB-cell CLL/lymphoma 7C
 BCL tumor suppressor 7C
 BCL7C, BAF complex component
LocusID (NCBI) 9274
Atlas_Id 780
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30887795 and ends at 30894077 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BCL7C (16p11.2) / LMF1 (16p13.3)BCL7C (16p11.2) / TSC22D1 (13q14.11)BCL7C (16p11.2) / ZNF720 (16p11.2)
CTF1 (16p11.2) / BCL7C (16p11.2)BCL7C 16p11.2 / ZNF720 16p11.2CTF1 16p11.2 / BCL7C 16p11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BCL7C   1006
Cards
Entrez_Gene (NCBI)BCL7C    BAF chromatin remodeling complex subunit BCL7C
Aliases
GeneCards (Weizmann)BCL7C
Ensembl hg19 (Hinxton)ENSG00000099385 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099385 [Gene_View]  ENSG00000099385 [Sequence]  chr16:30887795-30894077 [Contig_View]  BCL7C [Vega]
ICGC DataPortalENSG00000099385
TCGA cBioPortalBCL7C
AceView (NCBI)BCL7C
Genatlas (Paris)BCL7C
SOURCE (Princeton)BCL7C
Genetics Home Reference (NIH)BCL7C
Genomic and cartography
GoldenPath hg38 (UCSC)BCL7C  -     chr16:30887795-30894077 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BCL7C  -     16p11.2   [Description]    (hg19-Feb_2009)
GoldenPathBCL7C - 16p11.2 [CytoView hg19]  BCL7C - 16p11.2 [CytoView hg38]
ImmunoBaseENSG00000099385
genome Data Viewer NCBIBCL7C [Mapview hg19]  
OMIM605847   
Gene and transcription
Genbank (Entrez)AJ223980 BC019071 BC058863 BG055884
RefSeq transcript (Entrez)NM_001286526 NM_004765
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BCL7C
Alternative Splicing GalleryENSG00000099385
Gene ExpressionBCL7C [ NCBI-GEO ]   BCL7C [ EBI - ARRAY_EXPRESS ]   BCL7C [ SEEK ]   BCL7C [ MEM ]
Gene Expression Viewer (FireBrowse)BCL7C [ Firebrowse - Broad ]
GenevisibleExpression of BCL7C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9274
GTEX Portal (Tissue expression)BCL7C
Human Protein AtlasENSG00000099385-BCL7C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUZ0
Splice isoforms : SwissVarQ8WUZ0
PhosPhoSitePlusQ8WUZ0
Domains : Interpro (EBI)BCL7   
Domain families : Pfam (Sanger)BCL_N (PF04714)   
Domain families : Pfam (NCBI)pfam04714   
Conserved Domain (NCBI)BCL7C
Blocks (Seattle)BCL7C
SuperfamilyQ8WUZ0
Human Protein Atlas [tissue]ENSG00000099385-BCL7C [tissue]
Peptide AtlasQ8WUZ0
HPRD05787
IPIIPI00006266   IPI00447051   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUZ0
IntAct (EBI)Q8WUZ0
BioGRIDBCL7C
STRING (EMBL)BCL7C
ZODIACBCL7C
Ontologies - Pathways
QuickGOQ8WUZ0
Ontology : AmiGOapoptotic process  
Ontology : EGO-EBIapoptotic process  
NDEx NetworkBCL7C
Atlas of Cancer Signalling NetworkBCL7C
Wikipedia pathwaysBCL7C
Orthology - Evolution
OrthoDB9274
GeneTree (enSembl)ENSG00000099385
Phylogenetic Trees/Animal Genes : TreeFamBCL7C
HOGENOMQ8WUZ0
Homologs : HomoloGeneBCL7C
Homology/Alignments : Family Browser (UCSC)BCL7C
Gene fusions - Rearrangements
Fusion : MitelmanBCL7C/ZNF720 [16p11.2/16p11.2]  
Fusion : MitelmanCTF1/BCL7C [16p11.2/16p11.2]  
Fusion PortalBCL7C 16p11.2 ZNF720 16p11.2 BRCA
Fusion PortalCTF1 16p11.2 BCL7C 16p11.2 BRCA
Fusion : QuiverBCL7C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBCL7C [hg38]
dbVarBCL7C
ClinVarBCL7C
MonarchBCL7C
1000_GenomesBCL7C 
Exome Variant ServerBCL7C
GNOMAD BrowserENSG00000099385
Varsome BrowserBCL7C
Genomic Variants (DGV)BCL7C [DGVbeta]
DECIPHERBCL7C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBCL7C 
Mutations
ICGC Data PortalBCL7C 
TCGA Data PortalBCL7C 
Broad Tumor PortalBCL7C
OASIS PortalBCL7C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBCL7C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBCL7C
Mutations and Diseases : HGMDBCL7C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BCL7C
DgiDB (Drug Gene Interaction Database)BCL7C
DoCM (Curated mutations)BCL7C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BCL7C (select a term)
intoGenBCL7C
Cancer3DBCL7C(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605847   
Orphanet
DisGeNETBCL7C
MedgenBCL7C
Genetic Testing Registry BCL7C
NextProtQ8WUZ0 [Medical]
GENETestsBCL7C
Target ValidationBCL7C
Huge Navigator BCL7C [HugePedia]
ClinGenBCL7C
Clinical trials, drugs, therapy
MyCancerGenomeBCL7C
Protein Interactions : CTD
Pharm GKB GenePA25316
PharosQ8WUZ0
Clinical trialBCL7C
Miscellaneous
canSAR (ICR)BCL7C (select the gene name)
HarmonizomeBCL7C
DataMed IndexBCL7C
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBCL7C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:12:38 CET 2021
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