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BCL7C (BCL tumor suppressor 7C)

Identity

Alias_namesB-cell CLL/lymphoma 7C
Other alias-
HGNC (Hugo) BCL7C
LocusID (NCBI) 9274
Atlas_Id 780
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30834041 and ends at 30894302 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BCL7C (16p11.2) / LMF1 (16p13.3)BCL7C (16p11.2) / TSC22D1 (13q14.11)BCL7C (16p11.2) / ZNF720 (16p11.2)
CTF1 (16p11.2) / BCL7C (16p11.2)BCL7C 16p11.2 / ZNF720 16p11.2CTF1 16p11.2 / BCL7C 16p11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BCL7C   1006
Cards
Entrez_Gene (NCBI)BCL7C  9274  BCL tumor suppressor 7C
Aliases
GeneCards (Weizmann)BCL7C
Ensembl hg19 (Hinxton)ENSG00000099385 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099385 [Gene_View]  chr16:30834041-30894302 [Contig_View]  BCL7C [Vega]
ICGC DataPortalENSG00000099385
TCGA cBioPortalBCL7C
AceView (NCBI)BCL7C
Genatlas (Paris)BCL7C
WikiGenes9274
SOURCE (Princeton)BCL7C
Genetics Home Reference (NIH)BCL7C
Genomic and cartography
GoldenPath hg38 (UCSC)BCL7C  -     chr16:30834041-30894302 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BCL7C  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblBCL7C - 16p11.2 [CytoView hg19]  BCL7C - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIBCL7C [Mapview hg19]  BCL7C [Mapview hg38]
OMIM605847   
Gene and transcription
Genbank (Entrez)AJ223980 BC019071 BC058863 BG055884 HQ448500
RefSeq transcript (Entrez)NM_001286526 NM_004765
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BCL7C
Cluster EST : UnigeneHs.658547 [ NCBI ]
CGAP (NCI)Hs.658547
Alternative Splicing GalleryENSG00000099385
Gene ExpressionBCL7C [ NCBI-GEO ]   BCL7C [ EBI - ARRAY_EXPRESS ]   BCL7C [ SEEK ]   BCL7C [ MEM ]
Gene Expression Viewer (FireBrowse)BCL7C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9274
GTEX Portal (Tissue expression)BCL7C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUZ0
Splice isoforms : SwissVarQ8WUZ0
PhosPhoSitePlusQ8WUZ0
Domains : Interpro (EBI)BCL7   
Domain families : Pfam (Sanger)BCL_N (PF04714)   
Domain families : Pfam (NCBI)pfam04714   
Conserved Domain (NCBI)BCL7C
DMDM Disease mutations9274
Blocks (Seattle)BCL7C
SuperfamilyQ8WUZ0
Human Protein AtlasENSG00000099385
Peptide AtlasQ8WUZ0
HPRD05787
IPIIPI00006266   IPI00447051   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUZ0
IntAct (EBI)Q8WUZ0
FunCoupENSG00000099385
BioGRIDBCL7C
STRING (EMBL)BCL7C
ZODIACBCL7C
Ontologies - Pathways
QuickGOQ8WUZ0
Ontology : AmiGOapoptotic process  
Ontology : EGO-EBIapoptotic process  
NDEx NetworkBCL7C
Atlas of Cancer Signalling NetworkBCL7C
Wikipedia pathwaysBCL7C
Orthology - Evolution
OrthoDB9274
GeneTree (enSembl)ENSG00000099385
Phylogenetic Trees/Animal Genes : TreeFamBCL7C
HOVERGENQ8WUZ0
HOGENOMQ8WUZ0
Homologs : HomoloGeneBCL7C
Homology/Alignments : Family Browser (UCSC)BCL7C
Gene fusions - Rearrangements
Fusion : MitelmanBCL7C/ZNF720 [16p11.2/16p11.2]  
Fusion : MitelmanCTF1/BCL7C [16p11.2/16p11.2]  [t(16;16)(p11;p11)]  
Fusion: TCGABCL7C 16p11.2 ZNF720 16p11.2 BRCA
Fusion: TCGACTF1 16p11.2 BCL7C 16p11.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBCL7C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BCL7C
dbVarBCL7C
ClinVarBCL7C
1000_GenomesBCL7C 
Exome Variant ServerBCL7C
ExAC (Exome Aggregation Consortium)BCL7C (select the gene name)
Genetic variants : HAPMAP9274
Genomic Variants (DGV)BCL7C [DGVbeta]
DECIPHERBCL7C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBCL7C 
Mutations
ICGC Data PortalBCL7C 
TCGA Data PortalBCL7C 
Broad Tumor PortalBCL7C
OASIS PortalBCL7C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBCL7C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBCL7C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BCL7C
DgiDB (Drug Gene Interaction Database)BCL7C
DoCM (Curated mutations)BCL7C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BCL7C (select a term)
intoGenBCL7C
Cancer3DBCL7C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605847   
Orphanet
MedgenBCL7C
Genetic Testing Registry BCL7C
NextProtQ8WUZ0 [Medical]
TSGene9274
GENETestsBCL7C
Target ValidationBCL7C
Huge Navigator BCL7C [HugePedia]
snp3D : Map Gene to Disease9274
BioCentury BCIQBCL7C
ClinGenBCL7C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9274
Chemical/Pharm GKB GenePA25316
Clinical trialBCL7C
Miscellaneous
canSAR (ICR)BCL7C (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBCL7C
EVEXBCL7C
GoPubMedBCL7C
iHOPBCL7C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:56:01 CEST 2017

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