Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BCOR (BCL6 corepressor)

Identity

Alias (NCBI)ANOP2
MAA2
MCOPS2
HGNC (Hugo) BCOR
HGNC Alias symbFLJ20285
KIAA1575
HGNC Alias nameBCL6 interacting corepressor
 BCL-6 coreceptor
HGNC Previous nameBCL6 co-repressor
LocusID (NCBI) 54880
Atlas_Id 43165
Location Xp11.4  [Link to chromosome band Xp11]
Location_base_pair Starts at 40051253 and ends at 40097958 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BCOR (Xp11.4) / CCNB3 (Xp11.22)BCOR (Xp11.4) / CHCHD7 (8q12.1)BCOR (Xp11.4) / L3MBTL2 (22q13.2)
BCOR (Xp11.4) / POM121L12 (7p12.1)BCOR (Xp11.4) / RARA (17q21.2)EP300 (22q13.2) / BCOR (Xp11.4)
ZC3H7B (22q13.2) / BCOR (Xp11.4)ZC3H7B 22q13.2 / BCOR Xp11.4BCOR Xp11.4 / L3MBTL2 22q13.2
EP300 22q13.2 / BCOR Xp11.4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 6 ]
  B-cell Prolymphocytic Leukemia
M3/M3v acute myeloid leukemia (AML M3/M3v)
::Acute promyelocytic leukemia (APL)
::Acute promyelocytic leukemia (APL) PML/RARA
t(8;9)(q24;p13) ?/MYC
t(X;17)(p11;q21) BCOR/RARA
t(5;17)(q35;q21) NPM1/RARA
t(X;9)(p11;p13) PAX5/BCOR

External links

Nomenclature
HGNC (Hugo)BCOR   20893
LRG (Locus Reference Genomic)LRG_627
Cards
Entrez_Gene (NCBI)BCOR    BCL6 corepressor
AliasesANOP2; MAA2; MCOPS2
GeneCards (Weizmann)BCOR
Ensembl hg19 (Hinxton)ENSG00000183337 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183337 [Gene_View]  ENSG00000183337 [Sequence]  chrX:40051253-40097958 [Contig_View]  BCOR [Vega]
ICGC DataPortalENSG00000183337
TCGA cBioPortalBCOR
AceView (NCBI)BCOR
Genatlas (Paris)BCOR
SOURCE (Princeton)BCOR
Genetics Home Reference (NIH)BCOR
Genomic and cartography
GoldenPath hg38 (UCSC)BCOR  -     chrX:40051253-40097958 -  Xp11.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BCOR  -     Xp11.4   [Description]    (hg19-Feb_2009)
GoldenPathBCOR - Xp11.4 [CytoView hg19]  BCOR - Xp11.4 [CytoView hg38]
ImmunoBaseENSG00000183337
Genome Data Viewer NCBIBCOR [Mapview hg19]  
OMIM300166   300485   309800   
Gene and transcription
Genbank (Entrez)AB046795 AF317391 AF317392 AK000292 AK056538
RefSeq transcript (Entrez)NM_001123383 NM_001123384 NM_001123385 NM_001130139 NM_017745 NM_020926
Consensus coding sequences : CCDS (NCBI)BCOR
Gene ExpressionBCOR [ NCBI-GEO ]   BCOR [ EBI - ARRAY_EXPRESS ]   BCOR [ SEEK ]   BCOR [ MEM ]
Gene Expression Viewer (FireBrowse)BCOR [ Firebrowse - Broad ]
GenevisibleExpression of BCOR in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54880
GTEX Portal (Tissue expression)BCOR
Human Protein AtlasENSG00000183337-BCOR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BCOR
Human Protein Atlas [tissue]ENSG00000183337-BCOR [tissue]
HPRD06458
Protein Interaction databases
BioGRIDBCOR
STRING (EMBL)BCOR
ZODIACBCOR
Ontologies - Pathways
Litterature
PubMed121 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBCOR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:01:06 CEST 2021
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.