Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BCORL1 (BCL6 corepressor-like 1)

Identity

Alias_namesCXorf10
chromosome X open reading frame 10
BCL6 co-repressor-like 1
Alias_symbol (synonym)FLJ11362
Other aliasBCoR-L1
HGNC (Hugo) BCORL1
LocusID (NCBI) 63035
Atlas_Id 43166
Location Xq26.1  [Link to chromosome band Xq26]
Location_base_pair Starts at 129139164 and ends at 129192058 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ASH2L (8p11.23) / BCORL1 (Xq26.1)TAGLN (11q23.3) / BCORL1 (Xq26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BCORL1   25657
LRG (Locus Reference Genomic)LRG_628
Cards
Entrez_Gene (NCBI)BCORL1  63035  BCL6 corepressor-like 1
AliasesBCoR-L1; CXorf10
GeneCards (Weizmann)BCORL1
Ensembl hg19 (Hinxton)ENSG00000085185 [Gene_View]  chrX:129139164-129192058 [Contig_View]  BCORL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000085185 [Gene_View]  chrX:129139164-129192058 [Contig_View]  BCORL1 [Vega]
ICGC DataPortalENSG00000085185
TCGA cBioPortalBCORL1
AceView (NCBI)BCORL1
Genatlas (Paris)BCORL1
WikiGenes63035
SOURCE (Princeton)BCORL1
Genetics Home Reference (NIH)BCORL1
Genomic and cartography
GoldenPath hg19 (UCSC)BCORL1  -     chrX:129139164-129192058 +  Xq26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BCORL1  -     Xq26.1   [Description]    (hg38-Dec_2013)
EnsemblBCORL1 - Xq26.1 [CytoView hg19]  BCORL1 - Xq26.1 [CytoView hg38]
Mapping of homologs : NCBIBCORL1 [Mapview hg19]  BCORL1 [Mapview hg38]
OMIM300688   
Gene and transcription
Genbank (Entrez)AI209024 AK021424 AK024395 AK074089 AK124676
RefSeq transcript (Entrez)NM_001184772 NM_021946
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_021274 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)BCORL1
Cluster EST : UnigeneHs.496748 [ NCBI ]
CGAP (NCI)Hs.496748
Alternative Splicing GalleryENSG00000085185
Gene ExpressionBCORL1 [ NCBI-GEO ]   BCORL1 [ EBI - ARRAY_EXPRESS ]   BCORL1 [ SEEK ]   BCORL1 [ MEM ]
Gene Expression Viewer (FireBrowse)BCORL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63035
GTEX Portal (Tissue expression)BCORL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H9F3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H9F3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H9F3
Splice isoforms : SwissVarQ5H9F3
PhosPhoSitePlusQ5H9F3
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    BCOR    PUFD   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    BCOR (PF15808)    PUFD (PF16553)   
Domain families : Pfam (NCBI)pfam12796    pfam15808    pfam16553   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)BCORL1
DMDM Disease mutations63035
Blocks (Seattle)BCORL1
PDB (SRS)4HPM   
PDB (PDBSum)4HPM   
PDB (IMB)4HPM   
PDB (RSDB)4HPM   
Structural Biology KnowledgeBase4HPM   
SCOP (Structural Classification of Proteins)4HPM   
CATH (Classification of proteins structures)4HPM   
SuperfamilyQ5H9F3
Human Protein AtlasENSG00000085185
Peptide AtlasQ5H9F3
HPRD06517
IPIIPI00844087   IPI00386077   IPI00329707   
Protein Interaction databases
DIP (DOE-UCLA)Q5H9F3
IntAct (EBI)Q5H9F3
FunCoupENSG00000085185
BioGRIDBCORL1
STRING (EMBL)BCORL1
ZODIACBCORL1
Ontologies - Pathways
QuickGOQ5H9F3
Ontology : AmiGOnucleoplasm  cytoplasm  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  chromatin modification  
Ontology : EGO-EBInucleoplasm  cytoplasm  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  chromatin modification  
NDEx NetworkBCORL1
Atlas of Cancer Signalling NetworkBCORL1
Wikipedia pathwaysBCORL1
Orthology - Evolution
OrthoDB63035
GeneTree (enSembl)ENSG00000085185
Phylogenetic Trees/Animal Genes : TreeFamBCORL1
HOVERGENQ5H9F3
HOGENOMQ5H9F3
Homologs : HomoloGeneBCORL1
Homology/Alignments : Family Browser (UCSC)BCORL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBCORL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BCORL1
dbVarBCORL1
ClinVarBCORL1
1000_GenomesBCORL1 
Exome Variant ServerBCORL1
ExAC (Exome Aggregation Consortium)BCORL1 (select the gene name)
Genetic variants : HAPMAP63035
Genomic Variants (DGV)BCORL1 [DGVbeta]
DECIPHER (Syndromes)X:129139164-129192058  ENSG00000085185
CONAN: Copy Number AnalysisBCORL1 
Mutations
ICGC Data PortalBCORL1 
TCGA Data PortalBCORL1 
Broad Tumor PortalBCORL1
OASIS PortalBCORL1 [ Somatic mutations - Copy number]
Cancer Gene: CensusBCORL1 
Somatic Mutations in Cancer : COSMICBCORL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBCORL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch BCORL1
DgiDB (Drug Gene Interaction Database)BCORL1
DoCM (Curated mutations)BCORL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BCORL1 (select a term)
intoGenBCORL1
Cancer3DBCORL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300688   
Orphanet
MedgenBCORL1
Genetic Testing Registry BCORL1
NextProtQ5H9F3 [Medical]
TSGene63035
GENETestsBCORL1
Huge Navigator BCORL1 [HugePedia]
snp3D : Map Gene to Disease63035
BioCentury BCIQBCORL1
ClinGenBCORL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63035
Chemical/Pharm GKB GenePA134863970
Clinical trialBCORL1
Miscellaneous
canSAR (ICR)BCORL1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBCORL1
EVEXBCORL1
GoPubMedBCORL1
iHOPBCORL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:57:28 CET 2017

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