Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BCORL1 (BCL6 corepressor like 1)

Identity

Alias (NCBI)BCoR-L1
CXorf10
SHUVER
HGNC (Hugo) BCORL1
HGNC Alias symbFLJ11362
HGNC Previous nameCXorf10
HGNC Previous namechromosome X open reading frame 10
 BCL6 co-repressor-like 1
LocusID (NCBI) 63035
Atlas_Id 43166
Location Xq26.1  [Link to chromosome band Xq26]
Location_base_pair Starts at 129982635 and ends at 130058068 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ASH2L (8p11.23)::BCORL1 (Xq26.1)TAGLN (11q23.3)::BCORL1 (Xq26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)BCORL1   25657
LRG (Locus Reference Genomic)LRG_628
Cards
Entrez_Gene (NCBI)BCORL1    BCL6 corepressor like 1
AliasesBCoR-L1; CXorf10; SHUVER
GeneCards (Weizmann)BCORL1
Ensembl hg19 (Hinxton)ENSG00000085185 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000085185 [Gene_View]  ENSG00000085185 [Sequence]  chrX:129982635-130058068 [Contig_View]  BCORL1 [Vega]
ICGC DataPortalENSG00000085185
TCGA cBioPortalBCORL1
AceView (NCBI)BCORL1
Genatlas (Paris)BCORL1
SOURCE (Princeton)BCORL1
Genetics Home Reference (NIH)BCORL1
Genomic and cartography
GoldenPath hg38 (UCSC)BCORL1  -     chrX:129982635-130058068 +  Xq26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BCORL1  -     Xq26.1   [Description]    (hg19-Feb_2009)
GoldenPathBCORL1 - Xq26.1 [CytoView hg19]  BCORL1 - Xq26.1 [CytoView hg38]
ImmunoBaseENSG00000085185
Genome Data Viewer NCBIBCORL1 [Mapview hg19]  
OMIM300688   301029   
Gene and transcription
Genbank (Entrez)AI209024 AK021424 AK024395 AK074089 AK124676
RefSeq transcript (Entrez)NM_001184772 NM_001379450 NM_001379451 NM_021946
Consensus coding sequences : CCDS (NCBI)BCORL1
Gene ExpressionBCORL1 [ NCBI-GEO ]   BCORL1 [ EBI - ARRAY_EXPRESS ]   BCORL1 [ SEEK ]   BCORL1 [ MEM ]
Gene Expression Viewer (FireBrowse)BCORL1 [ Firebrowse - Broad ]
GenevisibleExpression of BCORL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63035
GTEX Portal (Tissue expression)BCORL1
Human Protein AtlasENSG00000085185-BCORL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H9F3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H9F3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H9F3
PhosPhoSitePlusQ5H9F3
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf    BCOR    PUFD    PUFD_som_sf   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    BCOR (PF15808)    PUFD (PF16553)   
Domain families : Pfam (NCBI)pfam12796    pfam15808    pfam16553   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)BCORL1
PDB (RSDB)4HPM    5JH5   
PDB Europe4HPM    5JH5   
PDB (PDBSum)4HPM    5JH5   
PDB (IMB)4HPM    5JH5   
Structural Biology KnowledgeBase4HPM    5JH5   
SCOP (Structural Classification of Proteins)4HPM    5JH5   
CATH (Classification of proteins structures)4HPM    5JH5   
SuperfamilyQ5H9F3
AlphaFold pdb e-kbQ5H9F3   
Human Protein Atlas [tissue]ENSG00000085185-BCORL1 [tissue]
HPRD06517
Protein Interaction databases
DIP (DOE-UCLA)Q5H9F3
IntAct (EBI)Q5H9F3
BioGRIDBCORL1
STRING (EMBL)BCORL1
ZODIACBCORL1
Ontologies - Pathways
QuickGOQ5H9F3
Ontology : AmiGOnucleoplasm  plasma membrane  chromatin organization  
Ontology : EGO-EBInucleoplasm  plasma membrane  chromatin organization  
NDEx NetworkBCORL1
Atlas of Cancer Signalling NetworkBCORL1
Wikipedia pathwaysBCORL1
Orthology - Evolution
OrthoDB63035
GeneTree (enSembl)ENSG00000085185
Phylogenetic Trees/Animal Genes : TreeFamBCORL1
Homologs : HomoloGeneBCORL1
Homology/Alignments : Family Browser (UCSC)BCORL1
Gene fusions - Rearrangements
Fusion : QuiverBCORL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBCORL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BCORL1
dbVarBCORL1
ClinVarBCORL1
MonarchBCORL1
1000_GenomesBCORL1 
Exome Variant ServerBCORL1
GNOMAD BrowserENSG00000085185
Varsome BrowserBCORL1
ACMGBCORL1 variants
VarityQ5H9F3
Genomic Variants (DGV)BCORL1 [DGVbeta]
DECIPHERBCORL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBCORL1 
Mutations
ICGC Data PortalBCORL1 
TCGA Data PortalBCORL1 
Broad Tumor PortalBCORL1
OASIS PortalBCORL1 [ Somatic mutations - Copy number]
Cancer Gene: CensusBCORL1 
Somatic Mutations in Cancer : COSMICBCORL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBCORL1
Mutations and Diseases : HGMDBCORL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaBCORL1
DgiDB (Drug Gene Interaction Database)BCORL1
DoCM (Curated mutations)BCORL1
CIViC (Clinical Interpretations of Variants in Cancer)BCORL1
Cancer3DBCORL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300688    301029   
Orphanet27491   
DisGeNETBCORL1
MedgenBCORL1
Genetic Testing Registry BCORL1
NextProtQ5H9F3 [Medical]
GENETestsBCORL1
Target ValidationBCORL1
Huge Navigator BCORL1 [HugePedia]
ClinGenBCORL1
Clinical trials, drugs, therapy
MyCancerGenomeBCORL1
Protein Interactions : CTDBCORL1
Pharm GKB GenePA134863970
PharosQ5H9F3
Clinical trialBCORL1
Miscellaneous
canSAR (ICR)BCORL1
HarmonizomeBCORL1
ARCHS4BCORL1
DataMed IndexBCORL1
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBCORL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jan 20 12:24:22 CET 2022

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.